Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1846
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 / ... 93 8e-19
BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome, ma... 93 8e-19
BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein. 93 8e-19
AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein. 34 0.51
U94855-1|AAD03467.1| 357|Homo sapiens translation initiation fa... 33 0.67
CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein. 33 0.67
BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation ... 33 0.67
BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation ... 33 0.67
AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens ... 33 0.67
BC062339-1|AAH62339.1| 458|Homo sapiens alkB, alkylation repair... 32 1.5
>D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 /
Mov34 protein protein.
Length = 324
Score = 93.1 bits (221), Expect = 8e-19
Identities = 40/58 (68%), Positives = 50/58 (86%)
Frame = +1
Query: 16 IIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 189
IIYQLQD+FNLLPD++ F+ Y+KTNDQ +VVYLA+L+RS++ALHNLINNKI NR
Sbjct: 226 IIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANR 283
>BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
protein.
Length = 324
Score = 93.1 bits (221), Expect = 8e-19
Identities = 40/58 (68%), Positives = 50/58 (86%)
Frame = +1
Query: 16 IIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 189
IIYQLQD+FNLLPD++ F+ Y+KTNDQ +VVYLA+L+RS++ALHNLINNKI NR
Sbjct: 226 IIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANR 283
>BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein.
Length = 326
Score = 93.1 bits (221), Expect = 8e-19
Identities = 40/58 (68%), Positives = 50/58 (86%)
Frame = +1
Query: 16 IIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 189
IIYQLQD+FNLLPD++ F+ Y+KTNDQ +VVYLA+L+RS++ALHNLINNKI NR
Sbjct: 226 IIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANR 283
>AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein.
Length = 348
Score = 33.9 bits (74), Expect = 0.51
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 28 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALH 159
L + N +P I D+F L+ ND +V YLA L +S IAL+
Sbjct: 299 LMSLVNQVPKIVPDDFETMLHSNINDLLMVAYLANLTQSQIALN 342
>U94855-1|AAD03467.1| 357|Homo sapiens translation initiation
factor 3 47 kDa subunit protein.
Length = 357
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 28 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINN 174
L + N +P I D+F L ND +V YLA L +S IAL+ + N
Sbjct: 308 LMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVN 356
>CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein.
Length = 357
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 28 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINN 174
L + N +P I D+F L ND +V YLA L +S IAL+ + N
Sbjct: 308 LMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVN 356
>BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 28 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINN 174
L + N +P I D+F L ND +V YLA L +S IAL+ + N
Sbjct: 308 LMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVN 356
>BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 28 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINN 174
L + N +P I D+F L ND +V YLA L +S IAL+ + N
Sbjct: 308 LMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVN 356
>AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
Length = 350
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 28 LQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINN 174
L + N +P I D+F L ND +V YLA L +S IAL+ + N
Sbjct: 301 LMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVN 349
>BC062339-1|AAH62339.1| 458|Homo sapiens alkB, alkylation repair
homolog 5 (E. coli) protein.
Length = 458
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 418 VLHFCFLYFIKISNFIFPWTCACKFLKN 501
V FCFL+F+ + +IFPW C LKN
Sbjct: 410 VFVFCFLFFLIL--YIFPWFCCLLGLKN 435
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,723,996
Number of Sequences: 237096
Number of extensions: 868672
Number of successful extensions: 1385
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -