Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1846
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    71   7e-13
AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 29/56 (51%), Positives = 46/56 (82%)
 Frame = +1

Query: 16  IIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKIT 183
           +IY +Q++ NLLPD+ + ++I +  V+TNDQ + VY+ +LVRS++ALHNLI+NKI+
Sbjct: 259 VIYYVQEVLNLLPDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKIS 314


>AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical
           protein F38H12.5 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -2

Query: 651 FFFFFLKDECY----LFYLXQ*LITTSKASGIAALEKYNVIWL 535
           F+F FL D  Y    +F+L   LITT+   G + LE+ ++  L
Sbjct: 45  FYFRFLMDILYSITIIFFLLSILITTTSFEGFSRLEEISIFVL 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,280
Number of Sequences: 27780
Number of extensions: 153909
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)