Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1845
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 272 3e-74
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 241 7e-65
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 29 0.94
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 6.6
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 6.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 6.6
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.6
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 272 bits (667), Expect = 3e-74
Identities = 125/194 (64%), Positives = 153/194 (78%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVS 183
KAGY GKI IG+DVA+SEF+ DGKYDLD K P + L+ ++L D+Y++ K +P+VS
Sbjct: 234 KAGYEGKIKIGLDVASSEFYVDGKYDLDIKAAKPKPENKLTYQQLTDLYVELSKKYPIVS 293
Query: 184 IEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVT 363
IEDPFDQDDWSAW ++ T QIVGDDLTVTN KR+ TA++KK N LLLKVNQIGSVT
Sbjct: 294 IEDPFDQDDWSAWTHMKAETDFQIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVT 353
Query: 364 ESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 543
ES++A ++ + GWG MVSHRSGET DTFI+ L VG+ GQ+K+GAPCRSERLAKYN++L
Sbjct: 354 ESLNAVRMSYEAGWGVMVSHRSGETADTFISHLTVGIGAGQLKSGAPCRSERLAKYNELL 413
Query: 544 RIEEELGVNAKYAG 585
RIEEELG YAG
Sbjct: 414 RIEEELGSEGVYAG 427
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 241 bits (590), Expect = 7e-65
Identities = 110/194 (56%), Positives = 148/194 (76%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVS 183
+AGY GK+ IG DVAASE + YDLDFK+ P + L +KL + Y I+ +P+V
Sbjct: 235 EAGYDGKVKIGFDVAASELYNGKLYDLDFKSEHPKPENKLDYKKLYEKYSALIEKYPIVF 294
Query: 184 IEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVT 363
IEDPF ++DW A++ ++ +T ++++ DDLTVTN KR++ A+E K N LL+K+NQIGS++
Sbjct: 295 IEDPFSEEDWGAFSYMSSKTKVEVIADDLTVTNVKRLSKAIELKCANALLVKINQIGSLS 354
Query: 364 ESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 543
E+IDA +AKK GWG MVSHRSGET+D+FIA L VGL GQ+K+GAPCRSERLAKYN++L
Sbjct: 355 ETIDAANMAKKAGWGLMVSHRSGETDDSFIAHLAVGLEAGQMKSGAPCRSERLAKYNELL 414
Query: 544 RIEEELGVNAKYAG 585
RIE+ LG +A YAG
Sbjct: 415 RIEDNLGDSAIYAG 428
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 292 IATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVG 471
I A+ +K CN +L + + IG VT AH+ K GT++ G T+ ++ L+ G
Sbjct: 40 IDEAIFEKNCNRMLDRASDIG-VT--FRAHVKTHKTIEGTLLQLGDGRTKAVVVSTLMEG 96
Query: 472 LS 477
S
Sbjct: 97 FS 98
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 76 YDLDFKNPDSNPGDYLSSEKLA 141
YD +NP +P ++LSS+K A
Sbjct: 229 YDFSSENPSIHPSNHLSSQKNA 250
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 471 FVHGS-DQDRRPVSLGASRQVQPN 539
FV GS +Q+RRP+S +QPN
Sbjct: 519 FVQGSGNQNRRPISFPVISNMQPN 542
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 61 FKDGKYDLDFKNPDSNPGDYLSSE---KLADVYLD-FIKDFP 174
+++ K DLDF NPGD + K V+ + F++ FP
Sbjct: 2159 YQEIKVDLDFALRSPNPGDIFEKKILPKFPPVFYEWFVESFP 2200
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/94 (22%), Positives = 37/94 (39%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVS 183
K ++ K ++ S K+ K + S LSSE+ + ++ K P
Sbjct: 179 KPNFSSKAGSSSPISVSPL-KNVKAYISQSPTHSEASSVLSSEEEEENVINSSKSVPSFD 237
Query: 184 IEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNP 285
+ DPF Q + ++ P+ +GD T P
Sbjct: 238 LHDPFSQ-TFGKECPISTAPPVLNIGDRSLETPP 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,996
Number of Sequences: 5004
Number of extensions: 66699
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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