Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1845
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 286 1e-77
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 279 1e-75
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 224 7e-59
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 208 3e-54
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 198 3e-51
06_03_0067 - 16167420-16167845,16168291-16168406,16168634-161688... 28 9.1
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 286 bits (701), Expect = 1e-77
Identities = 141/206 (68%), Positives = 164/206 (79%), Gaps = 5/206 (2%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDY-LSSEKLADVYLDFIKDFP 174
KAGY GK+ IGMDVAASEF+ KD YDL+FK D+N G + +S + L DVY F+ ++P
Sbjct: 268 KAGYTGKVVIGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKSFVSEYP 326
Query: 175 MVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ 348
+VSIEDPFDQDDW+ +A LT +QIVGDDL VTNP R+A A+ +K CN LLLKVNQ
Sbjct: 327 IVSIEDPFDQDDWATYAKLTDEIGQQVQIVGDDLLVTNPTRVAKAISEKTCNALLLKVNQ 386
Query: 349 IGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAK 528
IGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLSTGQIKTGAPCRSERLAK
Sbjct: 387 IGSVTESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAK 446
Query: 529 YNQILRIEEELGVNAKYAGKNFRXPV 606
YNQ+LRIEEELG A YAG+ FR PV
Sbjct: 447 YNQLLRIEEELGDAAVYAGEKFRAPV 472
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 279 bits (685), Expect = 1e-75
Identities = 133/181 (73%), Positives = 152/181 (83%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMV 180
KAGY+GKI IGMDVAASEF KDG YDL+FKN ++ LS+++L D+Y +F+KDFP+V
Sbjct: 280 KAGYSGKIKIGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFVKDFPIV 339
Query: 181 SIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSV 360
SIEDPFDQDDWS+WA+L IQIVGDDL VTNPKRIA A+ KKACN LLLKVNQIG+V
Sbjct: 340 SIEDPFDQDDWSSWASLQSSVNIQIVGDDLLVTNPKRIAEAIGKKACNALLLKVNQIGTV 399
Query: 361 TESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQI 540
TESI A L +K GWG MVSHRSGETED FIADL VGL++GQIKTGAPCRSERLAKYNQI
Sbjct: 400 TESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRSERLAKYNQI 459
Query: 541 L 543
+
Sbjct: 460 V 460
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 224 bits (547), Expect = 7e-59
Identities = 116/205 (56%), Positives = 143/205 (69%), Gaps = 4/205 (1%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPM 177
KAGY GK+ IGMDVAASEF+ KD YDL+FK +++ +S + L +VY F+ ++P+
Sbjct: 240 KAGYTGKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPI 299
Query: 178 VSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQI 351
VSIEDPFDQDDW +A +T +QIVGDDL VTNP R+A A+++K+CN LLLKVNQI
Sbjct: 300 VSIEDPFDQDDWEHYAKMTAEIGEQVQIVGDDLLVTNPTRVAKAIQEKSCNALLLKVNQI 359
Query: 352 GSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKY 531
GSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGL+T
Sbjct: 360 GSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLAT----------------- 402
Query: 532 NQILRIEEELGVNAKYAGKNFRXPV 606
+LRIEEELG A YAG FR PV
Sbjct: 403 --LLRIEEELGAAAVYAGAKFRAPV 425
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 208 bits (509), Expect = 3e-54
Identities = 117/218 (53%), Positives = 143/218 (65%), Gaps = 17/218 (7%)
Frame = +1
Query: 4 KAGYAGKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMV 180
KAGY GK+ IGMDVAASEF+ +D YDL+FK +++ +S + L +VY F+ ++P+V
Sbjct: 205 KAGYTGKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIV 264
Query: 181 SIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNP--------------KRIATAVEK 312
SIEDPFDQDDW +A +T +QIVGDDL VTNP +R+A A++
Sbjct: 265 SIEDPFDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTFPCWLQYSNQFDLQRVAKAIKD 324
Query: 313 KACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIK 492
KACN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLST
Sbjct: 325 KACNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLST---- 380
Query: 493 TGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRXPV 606
+LRIEEELG A YAG FR PV
Sbjct: 381 ---------------LLRIEEELGAAAVYAGAKFRAPV 403
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 198 bits (484), Expect = 3e-51
Identities = 90/175 (51%), Positives = 124/175 (70%)
Frame = +1
Query: 73 KYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 252
KYD++FK + + + +++ L ++Y ++P+VSIE PFD+DDW T Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364
Query: 253 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSG 432
+VGDDL +++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG
Sbjct: 365 VVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSG 424
Query: 433 ETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 597
+T+D+FIADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 425 DTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
>06_03_0067 -
16167420-16167845,16168291-16168406,16168634-16168871,
16168903-16169033,16169100-16169289
Length = 366
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 253 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ--IGSVTESIDAHLLAKKNGWGTMVSHR 426
+VGDDL PKR A ++ C ++ +Q IG + HL+A ++ V
Sbjct: 215 VVGDDLDNAVPKRDARFTNRRWC----VRDSQIVIGGAGMFVFQHLIATQSPATAAVMAG 270
Query: 427 SGETEDTFIADLVVGL 474
T+D A +VG+
Sbjct: 271 ESSTDDAAAAYTLVGI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,975,895
Number of Sequences: 37544
Number of extensions: 458986
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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