Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1845
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical pr...   333   7e-92
Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical pr...   333   7e-92
Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical pr...   324   3e-89
Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.5  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.5  
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical
           protein T21B10.2c protein.
          Length = 465

 Score =  333 bits (819), Expect = 7e-92
 Identities = 154/200 (77%), Positives = 172/200 (86%)
 Frame = +1

Query: 4   KAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVS 183
           KAGY GKI IGMDVAASEFFKDGKYDLDFKNP S+   +LS E+L ++Y  FIK++P+VS
Sbjct: 264 KAGYTGKISIGMDVAASEFFKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVS 323

Query: 184 IEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVT 363
           IED FDQDDW  W    G T IQ+VGDDLTVTNPKRI TA++KK+CNCLLLKVNQIGSVT
Sbjct: 324 IEDAFDQDDWDNWGKFHGATSIQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVT 383

Query: 364 ESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 543
           ESI+A  L++ NGWG MVSHRSGETEDTFIADLVVGL+TGQIKTGAPCRSERLAKYNQ+L
Sbjct: 384 ESIEAAKLSRANGWGVMVSHRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLL 443

Query: 544 RIEEELGVNAKYAGKNFRXP 603
           RIEEELG +A YAG NFR P
Sbjct: 444 RIEEELGADAVYAGHNFRNP 463


>Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical
           protein T21B10.2a protein.
          Length = 434

 Score =  333 bits (819), Expect = 7e-92
 Identities = 154/200 (77%), Positives = 172/200 (86%)
 Frame = +1

Query: 4   KAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVS 183
           KAGY GKI IGMDVAASEFFKDGKYDLDFKNP S+   +LS E+L ++Y  FIK++P+VS
Sbjct: 233 KAGYTGKISIGMDVAASEFFKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVS 292

Query: 184 IEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVT 363
           IED FDQDDW  W    G T IQ+VGDDLTVTNPKRI TA++KK+CNCLLLKVNQIGSVT
Sbjct: 293 IEDAFDQDDWDNWGKFHGATSIQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVT 352

Query: 364 ESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 543
           ESI+A  L++ NGWG MVSHRSGETEDTFIADLVVGL+TGQIKTGAPCRSERLAKYNQ+L
Sbjct: 353 ESIEAAKLSRANGWGVMVSHRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLL 412

Query: 544 RIEEELGVNAKYAGKNFRXP 603
           RIEEELG +A YAG NFR P
Sbjct: 413 RIEEELGADAVYAGHNFRNP 432


>Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical
           protein T21B10.2b protein.
          Length = 337

 Score =  324 bits (797), Expect = 3e-89
 Identities = 150/195 (76%), Positives = 168/195 (86%)
 Frame = +1

Query: 19  GKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPF 198
           GKI IGMDVAASEFFKDGKYDLDFKNP S+   +LS E+L ++Y  FIK++P+VSIED F
Sbjct: 141 GKISIGMDVAASEFFKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVSIEDAF 200

Query: 199 DQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDA 378
           DQDDW  W    G T IQ+VGDDLTVTNPKRI TA++KK+CNCLLLKVNQIGSVTESI+A
Sbjct: 201 DQDDWDNWGKFHGATSIQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVTESIEA 260

Query: 379 HLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEE 558
             L++ NGWG MVSHRSGETEDTFIADLVVGL+TGQIKTGAPCRSERLAKYNQ+LRIEEE
Sbjct: 261 AKLSRANGWGVMVSHRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLLRIEEE 320

Query: 559 LGVNAKYAGKNFRXP 603
           LG +A YAG NFR P
Sbjct: 321 LGADAVYAGHNFRNP 335


>Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical
           protein T13F3.5 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 244 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKK 396
           P+++    L    P  I     +K C CL   V+++G+   SI  H+L+++
Sbjct: 14  PLEVANQILEKLEP--IYQLTSRKVCKCLKTSVDKLGTHFYSITFHILSRE 62


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 699 YKHSQDYFFCWNQNADNLKTQNFTF 625
           +KH Q     W Q ADN+ TQN+T+
Sbjct: 408 HKHQQ-----WQQQADNMNTQNYTY 427


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 699 YKHSQDYFFCWNQNADNLKTQNFTF 625
           +KH Q     W Q ADN+ TQN+T+
Sbjct: 573 HKHQQ-----WQQQADNMNTQNYTY 592


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 242 VRPVRFAHADQSSWSKGSSMDTMGKSLMKSK*T--SANFSDDR*SPGLESGFLKSRSYLP 69
           V PVR+ + +Q SW      D +G++  + K T  S +F +   +P    GF    S   
Sbjct: 79  VTPVRWCYFNQLSWLDPFLKDNIGQAADEGKKTGKSDSFDEPSGTPFSWFGFPNLNSIKD 138

Query: 68  SLKNSEAATSMPMSIL 21
            +++ ++  ++  S+L
Sbjct: 139 EMEDDDSDPALESSVL 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,694,426
Number of Sequences: 27780
Number of extensions: 385258
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)