Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1843
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589...    30   2.5  
10_06_0104 + 10786613-10788040                                         29   4.3  

>01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,
            5899810-5900032,5900131-5900327,5900531-5900601,
            5904034-5904218,5905914-5906068,5906241-5907632,
            5907973-5908269
          Length = 1100

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 184  IDWL-AWRPFQFHQDRWASIGSA--RSLSNSCPYDSEGDLTTLEQLLHE*IYYRIGI 23
            I W+ AW   +FH   W   G+A   ++  S   D+ G L TL ++  E  ++R+ I
Sbjct: 902  IPWIFAWTQTRFHLPVWLGFGAAFRHAMQQS---DAGGGLATLREMYDEWPFFRVTI 955


>10_06_0104 + 10786613-10788040
          Length = 475

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 729 VWN*KXFFNNWAQSPSERHRDHAFCRAEIINN 634
           VW    F N W Q  S      AFC+A ++NN
Sbjct: 202 VWRYDPFVNAW-QEVSSMSTGRAFCKASLLNN 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,209,627
Number of Sequences: 37544
Number of extensions: 437009
Number of successful extensions: 883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)