Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1842
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC024770-9|AAF59487.2|  131|Caenorhabditis elegans Hypothetical ...    28   4.1  
U64847-5|AAB04874.1|  463|Caenorhabditis elegans Rh (rhesus) ant...    27   7.2  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    27   7.2  
AF183391-1|AAF97865.1|  463|Caenorhabditis elegans Rh-like prote...    27   7.2  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    27   9.5  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    27   9.5  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    27   9.5  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    27   9.5  

>U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical
           protein K03E6.7 protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 148 NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSV 267
           NI   D +  M  + +E++K +  A D V H+ KP  KSV
Sbjct: 387 NIGDDDTVSKMLMSHSELIKDIELATDRVGHILKPNIKSV 426


>AC024770-9|AAF59487.2|  131|Caenorhabditis elegans Hypothetical
           protein Y39H10A.1 protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 154 EKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADS 288
           ++RD  E +KNA    + T+  AG+A V       K   D + D+
Sbjct: 67  KRRDASEDIKNAGRNAIGTVDSAGNAAVDKAGELVKGGTDHIKDA 111


>U64847-5|AAB04874.1|  463|Caenorhabditis elegans Rh (rhesus)
           antigen related protein1 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 49  VTLIVSVEMDFRLLLLCCLYIAVVAAAFPSETRNIEKRDVMESM 180
           +TLI+ +      L++  LY +  A+A PSET+N+E+   M ++
Sbjct: 10  LTLILGL-FQVVFLVIFALYGSYDASALPSETKNVEEAARMTNL 52


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 139 ETRNIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ 306
           E  N EK  ++ S +  W ++V+     GD     F P EK  +DK    +K++T+
Sbjct: 290 EKVNGEKESIIYSSR--WEQLVEDFFKNGDKAE--FAPFEKFPLDKKMHLIKTITE 341


>AF183391-1|AAF97865.1|  463|Caenorhabditis elegans Rh-like
           protein-2 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 49  VTLIVSVEMDFRLLLLCCLYIAVVAAAFPSETRNIEKRDVMESM 180
           +TLI+ +      L++  LY +  A+A PSET+N+E+   M ++
Sbjct: 10  LTLILGL-FQVVFLVIFALYGSYDASALPSETKNVEEAARMTNL 52


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 148 NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ 306
           N EK  ++ S +  W ++V+     GD     F P EK  +DK    +K++T+
Sbjct: 293 NGEKESIIYSSR--WEQLVEDFFKNGDKAE--FAPFEKFPLDKKMHLIKTITE 341


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 148 NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ 306
           N EK  ++ S +  W ++V+     GD     F P EK  +DK    +K++T+
Sbjct: 293 NGEKESIIYSSR--WEQLVEDFFKNGDKAE--FAPFEKFPLDKKMHLIKTITE 341


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 148 NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ 306
           N EK  ++ S +  W ++V+     GD     F P EK  +DK    +K++T+
Sbjct: 293 NGEKESIIYSSR--WEQLVEDFFKNGDKAE--FAPFEKFPLDKKMHLIKTITE 341


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 130 FPSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAVVH 240
           F  + +++ ++DV+ ++K++ + V+KTL       VH
Sbjct: 679 FREKNKDLMRQDVLNALKSSTSSVMKTLLGIDPVAVH 715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,182
Number of Sequences: 27780
Number of extensions: 253091
Number of successful extensions: 650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)