Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1840
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0357 - 2797523-2799109                                           29   2.8  
08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543           29   3.6  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    29   4.8  
10_08_0566 + 18831063-18832586                                         28   8.4  

>03_01_0357 - 2797523-2799109
          Length = 528

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 658 SRNARSQATKAYISYRDYYHTRFENVRTRIIILETTGQSKRTFLKRNGMQKVIVT*T 488
           +RNA+  A             R E V ++++  ET G   R F+KR+GM  +  T T
Sbjct: 247 ARNAKQAAADMSKVLHAEIEERPEVVESQVVAGETWGLFSRQFMKRHGMHLLATTST 303


>08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543
          Length = 389

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 586 SRI*YDNNLGKIYTLWSLDFVHSDWCEFVGMSISGRRS 699
           +R+  D + GK+ + W+ +FV SD  +++G   +  +S
Sbjct: 108 ARVAVDRSAGKLESFWAQNFVTSDLLKYIGERTTSLKS 145


>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
            32237909-32239263,32240399-32240460,32240544-32241144,
            32241229-32241310,32241778-32241840
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 155  PGPTPDWTSTEPSNRLSKSSRRFVRERSFCRGRPTP 262
            PGP   W +T P+   S +S R +   SF    P P
Sbjct: 903  PGPGSPWENTTPNPSFSHASPRMMPGSSFRMNPPAP 938


>10_08_0566 + 18831063-18832586
          Length = 507

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 73  KCLWSLFYNVKDTSSPVSSVVDNVHVCSGPDAGL 174
           K +W L  ++ D   PVSS   ++ VC+   AGL
Sbjct: 199 KAMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGL 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,284,971
Number of Sequences: 37544
Number of extensions: 401697
Number of successful extensions: 1307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)