Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1840
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical ...    35   0.066
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    31   1.1  
Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    29   4.3  
Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical
           protein Y67D2.1a protein.
          Length = 510

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 136 DNVHVCSGPDAGLDFDRAVEQAEQIFKKICPGEEFLPRAPNPEEIVFEDDVT 291
           +NV V    DA L +   VE+  Q+F    P  +FLPRA   EE   E+  T
Sbjct: 453 ENVVVAPPVDANLHYASVVEECRQLFCTTWPELDFLPRAMKKEEEEEEEPET 504


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 197 RLSKSSRRFVRERSFCRGRPTPRR*CSRMTSPTDPNSNGNKTKKPNRRSR 346
           R S+S RR  R   + R R +PRR  SR  SP   +   +  ++ N RSR
Sbjct: 114 RRSRSPRRRSRSPRYSRSR-SPRRSRSRTRSPPSRDRRDSPDRRDNSRSR 162


>Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical
           protein T26H2.4 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 288 DVILEHYLLGVGRPRQKLLSRTNLLEDLLSLFDG 187
           ++ L+H+LLG+     KLL+   L++D  +L DG
Sbjct: 244 NLFLKHWLLGISSQNLKLLTVCFLIDDKNALLDG 277


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
            protein Y75B8A.13 protein.
          Length = 1420

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 244  PRAPNPEEIVFEDDVTHGPEFQREQDEEAEPKE 342
            PR  +PE +   ++ +  P  QR +D+EA P E
Sbjct: 1174 PRQQDPESMESFNEASEAPPDQRSEDQEAIPAE 1206


>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 73  KCLWSLFYNVKDTSSPVSSVVDNVHVCSGPDAGLDFD 183
           KC+WSL Y  +D S   S   D V +CS  D    F+
Sbjct: 119 KCIWSLEYLKQDKSLAPSDRTDRV-ICSQTDESGPFN 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,458
Number of Sequences: 27780
Number of extensions: 346438
Number of successful extensions: 1112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)