Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1839
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.1  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   1.9  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.5  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   5.9  

>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 424 EKLSDV-DPQKVNKFIEFLKRFSANLKEGVQDAKKQLK 534
           +++ DV DP+    ++  +  FS+N++EG + +  QLK
Sbjct: 224 QQIQDVQDPETRKDYMNAINNFSSNVQEGAKQSFTQLK 261


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 188 KHDQLKQFELLRTQLRLKRELLQKYRNM 271
           KH++  Q ELLRT  R   E L+KY+++
Sbjct: 292 KHEE-SQVELLRTHNRQMTETLEKYKSL 318


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 38   DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLK-QFE 214
            DII   ER+  +   ++RE  E   + +EL  R          +    ++   + K + +
Sbjct: 929  DIIPLTEREKFEEEDRLREEEEALKQEIELSSRRGNRPYPSSAVESPSYSGTSERKSKKQ 988

Query: 215  LLRTQLRLKRELLQKYRNMCSF 280
            +L+ ++ L++E+   YR M  +
Sbjct: 989  MLKDEVLLEKEIRLLYRAMIRY 1010


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 409 FYRGKEKLSDVDPQKVNKFIEFLKR 483
           F+R K KLS V+P  +   + F K+
Sbjct: 203 FFREKVKLSTVEPSAIKNLVLFAKK 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,882
Number of Sequences: 5004
Number of extensions: 42844
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)