Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1839
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0049 + 10641363-10641563,10641640-10641750,10641893-106421...    30   2.0  
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474...    28   6.0  
03_02_0443 + 8538938-8539069,8540635-8540859,8541386-8541523           28   8.0  

>01_02_0049 +
           10641363-10641563,10641640-10641750,10641893-10642123,
           10642253-10642357,10642546-10642704
          Length = 268

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 33/50 (66%)
 Frame = +2

Query: 98  HECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRE 247
           HE   +VL+L+  L++++AQ+R+L  +   +   LK+   L+++L LK++
Sbjct: 191 HELKKKVLKLECTLKVSRAQLRKLHKMVERRDKPLKK---LQSRLPLKQQ 237


>09_04_0493 -
           18046553-18046990,18047061-18047180,18047290-18047478,
           18047596-18047739,18048673-18048900,18049659-18049838,
           18050304-18050399,18051096-18051262,18051356-18051773,
           18052335-18052517,18053846-18053953,18054053-18054246,
           18054503-18054662
          Length = 874

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 354 EDCRVLPCTKSSSVSCLSILQREG 425
           E C++LPC KS+S + LS++ R+G
Sbjct: 654 ECCKLLPCVKSAS-AVLSLMLRDG 676


>03_02_0443 + 8538938-8539069,8540635-8540859,8541386-8541523
          Length = 164

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/67 (19%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +2

Query: 41  IIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLP-GIEFNKHDQLKQFEL 217
           ++ +   D  DN+     + +   ++  L+K++ +A+AQ++  P  ++  + +++K+ E 
Sbjct: 88  VVATSSTDATDNSKSESSAPDIDKKIRALKKKIRLAEAQVQGDPENLKPEQLEKMKKIEG 147

Query: 218 LRTQLRL 238
            + +L+L
Sbjct: 148 WKEELKL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,414
Number of Sequences: 37544
Number of extensions: 241033
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)