Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1839
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112029-1|AAI12030.1|  146|Homo sapiens mediator complex subuni...    58   4e-08
BC104988-1|AAI04989.1|  146|Homo sapiens mediator complex subuni...    58   4e-08
AK001055-1|BAA91483.1|  146|Homo sapiens protein ( Homo sapiens ...    58   4e-08
BC062368-1|AAH62368.1|   99|Homo sapiens LOC152217 protein protein.    36   0.18 
BC025970-1|AAH25970.1|  286|Homo sapiens HEXIM2 protein protein.       31   3.8  
BC012474-1|AAH12474.1|  286|Homo sapiens hexamthylene bis-acetam...    31   3.8  
BC003531-1|AAH03531.1|  286|Homo sapiens HEXIM2 protein protein.       31   3.8  
AY598322-1|AAT06733.1|  286|Homo sapiens L3 protein.                   31   3.8  
AK056946-1|BAB71319.1|  286|Homo sapiens protein ( Homo sapiens ...    31   3.8  
Y08564-1|CAA69875.1|  578|Homo sapiens UDP-GalNAc:polypeptide N-...    31   5.1  
AL139421-3|CAI22510.1| 1044|Homo sapiens coiled-coil domain cont...    31   5.1  
AL139421-1|CAI22508.1| 1454|Homo sapiens coiled-coil domain cont...    31   5.1  
AK126045-1|BAC86410.1|  978|Homo sapiens galactosaminyltransfera...    31   5.1  

>BC112029-1|AAI12030.1|  146|Homo sapiens mediator complex subunit 9
           protein.
          Length = 146

 Score = 57.6 bits (133), Expect = 4e-08
 Identities = 31/94 (32%), Positives = 53/94 (56%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE 181
           E+ +  FLP+V++II+ +++D          S E    +  L+ + +  +  I  +PGI 
Sbjct: 59  EEENYSFLPLVHNIIKCMDKD----------SPEVHQDLNALKSKFQEMRKLISTMPGIH 108

Query: 182 FNKHDQLKQFELLRTQLRLKRELLQKYRNMCSFE 283
            +   Q +Q + LR Q+R K ELLQKY+++C FE
Sbjct: 109 LSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFE 142


>BC104988-1|AAI04989.1|  146|Homo sapiens mediator complex subunit 9
           protein.
          Length = 146

 Score = 57.6 bits (133), Expect = 4e-08
 Identities = 31/94 (32%), Positives = 53/94 (56%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE 181
           E+ +  FLP+V++II+ +++D          S E    +  L+ + +  +  I  +PGI 
Sbjct: 59  EEENYSFLPLVHNIIKCMDKD----------SPEVHQDLNALKSKFQEMRKLISTMPGIH 108

Query: 182 FNKHDQLKQFELLRTQLRLKRELLQKYRNMCSFE 283
            +   Q +Q + LR Q+R K ELLQKY+++C FE
Sbjct: 109 LSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFE 142


>AK001055-1|BAA91483.1|  146|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10193 fis, clone HEMBA1004763. ).
          Length = 146

 Score = 57.6 bits (133), Expect = 4e-08
 Identities = 31/94 (32%), Positives = 53/94 (56%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE 181
           E+ +  FLP+V++II+ +++D          S E    +  L+ + +  +  I  +PGI 
Sbjct: 59  EEENYSFLPLVHNIIKCMDKD----------SPEVHQDLNALKSKFQEMRKLISTMPGIH 108

Query: 182 FNKHDQLKQFELLRTQLRLKRELLQKYRNMCSFE 283
            +   Q +Q + LR Q+R K ELLQKY+++C FE
Sbjct: 109 LSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFE 142


>BC062368-1|AAH62368.1|   99|Homo sapiens LOC152217 protein protein.
          Length = 99

 Score = 35.5 bits (78), Expect = 0.18
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +1

Query: 301 MPLRALLKYLANNERIVQKIAESYPVRRAAQL 396
           M LR LL  L ++ ++V++++ES P+RRAAQL
Sbjct: 1   MVLRRLLAALLHSPQLVERLSESRPIRRAAQL 32


>BC025970-1|AAH25970.1|  286|Homo sapiens HEXIM2 protein protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 38  DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFE 214
           D   + ER FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E
Sbjct: 192 DFSETYER-FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVE 250

Query: 215 LLRTQLRLKRELLQKYR 265
            L  +++  R   Q+ R
Sbjct: 251 ELAAEVQRLRTENQRLR 267


>BC012474-1|AAH12474.1|  286|Homo sapiens hexamthylene bis-acetamide
           inducible 2 protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 38  DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFE 214
           D   + ER FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E
Sbjct: 192 DFSETYER-FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVE 250

Query: 215 LLRTQLRLKRELLQKYR 265
            L  +++  R   Q+ R
Sbjct: 251 ELAAEVQRLRTENQRLR 267


>BC003531-1|AAH03531.1|  286|Homo sapiens HEXIM2 protein protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 38  DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFE 214
           D   + ER FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E
Sbjct: 192 DFSETYER-FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVE 250

Query: 215 LLRTQLRLKRELLQKYR 265
            L  +++  R   Q+ R
Sbjct: 251 ELAAEVQRLRTENQRLR 267


>AY598322-1|AAT06733.1|  286|Homo sapiens L3 protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 38  DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFE 214
           D   + ER FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E
Sbjct: 192 DFSETYER-FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVE 250

Query: 215 LLRTQLRLKRELLQKYR 265
            L  +++  R   Q+ R
Sbjct: 251 ELAAEVQRLRTENQRLR 267


>AK056946-1|BAB71319.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32384 fis, clone SKMUS1000104, weakly similar to
           Homo sapiens mRNA for HEXIM1 protein, complete cds. ).
          Length = 286

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 38  DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFE 214
           D   + ER FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E
Sbjct: 192 DFSETYER-FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVE 250

Query: 215 LLRTQLRLKRELLQKYR 265
            L  +++  R   Q+ R
Sbjct: 251 ELAAEVQRLRTENQRLR 267


>Y08564-1|CAA69875.1|  578|Homo sapiens UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase protein.
          Length = 578

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 20  FLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE---FNK 190
           FL + Y  +  +   FH +A   R     S R+ +LQK  E     + + P  +     +
Sbjct: 17  FLTVAYIFVELLVSTFHASAGAGRARELGSRRLSDLQKNTEDLSRPLYKKPPADSRALGE 76

Query: 191 HDQLKQFELLRTQLRLKRELLQKY 262
             +  + +L   +L+ + EL+++Y
Sbjct: 77  WGKASKLQLNEDELKQQEELIERY 100


>AL139421-3|CAI22510.1| 1044|Homo sapiens coiled-coil domain
           containing 18 protein.
          Length = 1044

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92  ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF--ELLRTQLRLK 241
           E  EC+ ++  L  +L+ AK Q+R    I      ++ Q   E+ RTQ R+K
Sbjct: 804 ELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 855


>AL139421-1|CAI22508.1| 1454|Homo sapiens coiled-coil domain
            containing 18 protein.
          Length = 1454

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92   ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF--ELLRTQLRLK 241
            E  EC+ ++  L  +L+ AK Q+R    I      ++ Q   E+ RTQ R+K
Sbjct: 1058 ELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1109


>AK126045-1|BAC86410.1|  978|Homo sapiens galactosaminyltransferase
           9  protein.
          Length = 978

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92  ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF--ELLRTQLRLK 241
           E  EC+ ++  L  +L+ AK Q+R    I      ++ Q   E+ RTQ R+K
Sbjct: 738 ELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 789


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,607,773
Number of Sequences: 237096
Number of extensions: 1325573
Number of successful extensions: 3708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3708
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)