Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1839
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001821-1|AAN71576.1|  144|Drosophila melanogaster RH42446p pro...   116   3e-26
AY122154-1|AAM52666.1|  155|Drosophila melanogaster LD07740p pro...   116   3e-26
AE013599-2640|AAM68182.1|  144|Drosophila melanogaster CG5134-PC...   116   3e-26
AE013599-2639|AAF57734.3|  175|Drosophila melanogaster CG5134-PB...    74   2e-13

>BT001821-1|AAN71576.1|  144|Drosophila melanogaster RH42446p
           protein.
          Length = 144

 Score =  116 bits (279), Expect = 3e-26
 Identities = 48/89 (53%), Positives = 74/89 (83%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE 181
           + +D++ LPI+YDI+R VE+D  +NA K+RES +C+H++ ELQKR E A+ QIR+LPGI+
Sbjct: 53  DQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFESAREQIRQLPGID 112

Query: 182 FNKHDQLKQFELLRTQLRLKRELLQKYRN 268
           FNK +Q ++ ELLR QL+LK++L++KY++
Sbjct: 113 FNKEEQQQRLELLRNQLKLKQQLIRKYKD 141


>AY122154-1|AAM52666.1|  155|Drosophila melanogaster LD07740p
           protein.
          Length = 155

 Score =  116 bits (279), Expect = 3e-26
 Identities = 48/89 (53%), Positives = 74/89 (83%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE 181
           + +D++ LPI+YDI+R VE+D  +NA K+RES +C+H++ ELQKR E A+ QIR+LPGI+
Sbjct: 64  DQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFESAREQIRQLPGID 123

Query: 182 FNKHDQLKQFELLRTQLRLKRELLQKYRN 268
           FNK +Q ++ ELLR QL+LK++L++KY++
Sbjct: 124 FNKEEQQQRLELLRNQLKLKQQLIRKYKD 152


>AE013599-2640|AAM68182.1|  144|Drosophila melanogaster CG5134-PC,
           isoform C protein.
          Length = 144

 Score =  116 bits (279), Expect = 3e-26
 Identities = 48/89 (53%), Positives = 74/89 (83%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE 181
           + +D++ LPI+YDI+R VE+D  +NA K+RES +C+H++ ELQKR E A+ QIR+LPGI+
Sbjct: 53  DQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFESAREQIRQLPGID 112

Query: 182 FNKHDQLKQFELLRTQLRLKRELLQKYRN 268
           FNK +Q ++ ELLR QL+LK++L++KY++
Sbjct: 113 FNKEEQQQRLELLRNQLKLKQQLIRKYKD 141


>AE013599-2639|AAF57734.3|  175|Drosophila melanogaster CG5134-PB,
           isoform B protein.
          Length = 175

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
 Frame = +1

Query: 298 KMPLRALLKYLANNERIVQKIAESYPVRRAAQLAVSVFYRGKE--KLSDVDPQKVNKFIE 471
           KM LR L++YLANNE+++Q++AESYP+RRAAQL VS+ YR K+  +   +      +F  
Sbjct: 90  KMVLRLLMRYLANNEQLIQRMAESYPMRRAAQLVVSLMYRTKDLAREQGLHEMTPERFKS 149

Query: 472 FLKRFSANLKEGVQDAKKQL 531
           F+  F  N+++ ++  KK+L
Sbjct: 150 FVNMFKNNVRQELEGVKKEL 169



 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 23/46 (50%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = +2

Query: 2   EDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHR-VLELQKR 136
           + +D++ LPI+YDI+R VE+D  +NA K+RES +C+H+ VL L  R
Sbjct: 53  DQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKMVLRLLMR 98


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,662,795
Number of Sequences: 53049
Number of extensions: 439608
Number of successful extensions: 1596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)