Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1839
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    29   4.1  
AF047659-7|AAY86256.1|  302|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormo...    27   9.5  

>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 32  VYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF 211
           V DI+++V     D A  I+E  E  H + E+QK      ++ ++L   E +K+D   + 
Sbjct: 763 VKDILKNVADITADMAPVIQERKEAEHTLAEIQKETRDFASKSQKLQN-ELSKYDDAGEI 821

Query: 212 ELLR 223
             +R
Sbjct: 822 LKIR 825


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 32  VYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF 211
           V DI+++V     D A  I+E  E  H + E+QK      ++ ++L   E +K+D   + 
Sbjct: 763 VKDILKNVADITADMAPVIQERKEAEHTLAEIQKETRDFASKSQKLQN-ELSKYDDAGEI 821

Query: 212 ELLR 223
             +R
Sbjct: 822 LKIR 825


>AF047659-7|AAY86256.1|  302|Caenorhabditis elegans Hypothetical
           protein K07H8.11 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 62  DFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIE---FNKHDQLKQFELLRTQL 232
           DF  N +KI         + +  K++   K  ++  P I+   FN +D L   ELLR   
Sbjct: 96  DFFQNRTKISRISVTLPSLTDDLKKITKRKNSVKTKPAIDNFRFNSYDSLLYNELLRLST 155

Query: 233 RLKREL 250
            + ++L
Sbjct: 156 GIPKQL 161


>AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 75 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 7   CRCRLFTDCIRYNTKRGERFSRQRVENTRVPRVQS*SS*ITK 132
           CR   +T+C+     RG   SRQR   +  P+  S  S I K
Sbjct: 94  CRACRYTNCLEAGMSRGNEASRQRNIPSNSPQTYSGYSKILK 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,887
Number of Sequences: 27780
Number of extensions: 233520
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)