Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1836
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   1.2  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   5.0  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 169 IFVFPQFE-PNKLRLPFVFKYTFSCVFFLLFNYYLPK 276
           + +FP ++ PNK+ + +        VFF +  YYLPK
Sbjct: 466 MLLFPSYQNPNKVEMNWAIVVLGFTVFFCVGYYYLPK 502


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 542 PSWTSISETATYLYLYKRQSSFIYLYYLAETSDKTNYKFN 661
           P +T+   T TY Y+ +   S ++LY  AE  DK ++K N
Sbjct: 216 PFFTNKILTKTYYYMEESGPSNVFLYDHAE-GDKVDWKEN 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,056
Number of Sequences: 5004
Number of extensions: 45884
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)