Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1835
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    77   4e-15
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    64   2e-11
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    27   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.2  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   7.2  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   7.2  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   9.5  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   9.5  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    25   9.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 42/113 (37%), Positives = 64/113 (56%)
 Frame = +2

Query: 317 LKENGIQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLV 496
           +K N      DIK+LLLGAG+SGK+TI+KQM++++  GF+    KQYR +++ N I SL 
Sbjct: 64  VKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLC 123

Query: 497 AILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEPFSEELLAAMKRLWADS 655
            +L AM N  +     + +   + V       +  EPFS E+  A+  L  D+
Sbjct: 124 LLLEAMDNSNVSLLPENEKY--RAVILRKHTSQPNEPFSPEIYEAVHALTLDT 174


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
 Frame = +2

Query: 305 IDKNLKENGIQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTI 484
           I+K ++    +  K  K+LLLGA +SGKSTI KQ+KI++++GF+ E+   + PV+  N +
Sbjct: 20  IEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPVIRRNLL 79

Query: 485 QSLVAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDT--EPFSEELLAAMKRLWADSG 658
           +S   +++ +   GI     + +  G    ++I++   T  E  +  +  A+  LW+ + 
Sbjct: 80  ESAKTLVKIIVQKGI-----NLDPLGTHNCEIIEKFNPTPGELINANIGQAITSLWSANS 134

Query: 659 VXECFWSXHRV 691
           V  C +    V
Sbjct: 135 VRSCTYGNDSV 145


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/26 (34%), Positives = 22/26 (84%)
 Frame = +2

Query: 338 ASKDIKLLLLGAGESGKSTIVKQMKI 415
           ++K++++L+LG   +GK+TI+ ++K+
Sbjct: 18  SNKEMRILMLGLDAAGKTTILYKLKL 43


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 255  PISAVLPMLWPQAA--PTPEPGALSPISQHALYTRPVAPALPEPP 127
            P S + P+  P A   P P P    P+ + ++   PV P    PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 302 LIDKNLKENGIQASKD-IKLLLL-GAGESGKSTIVKQMKI 415
           L DK+   N I  S D ++ LL+ G    GKS+ VKQ+ +
Sbjct: 746 LSDKSFVPNHIHLSSDGVRCLLITGPNMGGKSSFVKQLAL 785


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 240 LPMLWPQAAPTPEPGALS-PISQHALYTRPVAPALPEPP 127
           LPM  P A P P    ++ P+        P+ PA P PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +2

Query: 344 KDIKLLLLGAGESGKSTIVK 403
           +++++LLLG   +GK+TI+K
Sbjct: 15  REVRVLLLGLDNAGKTTILK 34


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -2

Query: 213 PTPEPGALSPISQHALYTRPVAPALPEPPY--TILAPN 106
           P P PG +      A  T P AP +P  P+  TI A N
Sbjct: 290 PPPPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQN 327


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 332 IQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 442
           I     I +  +G    GKST+VK +  +H   F NE
Sbjct: 18  ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE 54


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 369 VLANRARVL*SNR*KLSMKVDSQMKTSNSTGPWS 470
           +LAN  R++ SN  K+    D Q + S   GPW+
Sbjct: 1   MLANALRLV-SNSKKIKYDYDIQKENSVQVGPWT 33


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 174 HALYTRPVAPALPEPP 127
           +A Y RPVAP +P+ P
Sbjct: 137 NAEYNRPVAPVIPDAP 152


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 249  SAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT--ILAPNTRT 97
            +A  P+  P A   P P A    +      RP APA+   P T    AP T T
Sbjct: 995  AATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTST 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,817
Number of Sequences: 5004
Number of extensions: 61323
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)