Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1835
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 42 8e-04
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 41 0.001
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770... 40 0.003
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 31 1.1
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 31 1.4
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682 30 1.9
09_04_0541 + 18437075-18440062 30 2.5
04_03_0799 - 19805190-19805749,19806316-19806403 29 3.2
03_05_0543 - 25404630-25405408,25405461-25405605 29 3.2
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 29 4.3
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 4.3
12_01_0981 + 9931542-9931606,9931779-9933105 29 5.7
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661... 29 5.7
11_01_0307 + 2304500-2306023 28 7.5
10_03_0023 - 7151465-7152111,7152222-7152405 28 7.5
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 7.5
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 28 9.9
03_05_0865 - 28365430-28367640 28 9.9
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 28 9.9
01_01_0897 + 7070539-7071522,7071949-7072620 28 9.9
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +2
Query: 353 KLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAIL 505
KLL+LG+ +G STI KQ K+++++ FT E+ + ++ SN + L +L
Sbjct: 456 KLLILGSPGAGTSTIFKQAKLLYDTRFTQEELDSIKLMIQSNMFKYLGILL 506
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 353 KLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAIL 505
KLLLLG +G STI KQ K ++ + FT E+ + + ++ SN + L +L
Sbjct: 444 KLLLLGPDGAGTSTIFKQAKYLYGTRFTQEELENIKLIIQSNMFKYLGILL 494
>05_03_0561 -
15476484-15476649,15476814-15476893,15476971-15477030,
15477117-15477210,15477287-15477421,15477601-15477656,
15478359-15478460,15478544-15478651,15479206-15479283,
15479432-15479521,15480061-15480123
Length = 343
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Frame = +2
Query: 404 QMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGNR-------DRESDG 562
++K++ ++GF + + Y V+++N Q++ + L + + D + G
Sbjct: 21 KIKLLFQTGFDEAELRSYTSVIHANVYQTIKILYEGAKELSQVESDSSKYVISPDNQEIG 80
Query: 563 KMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVXECF 673
+ + D+ R+ D ++EL+ +KRLW D + E +
Sbjct: 81 EKLSDIDGRL-DYPLLNKELVLDVKRLWQDPAIQETY 116
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -2
Query: 261 AHPISAVLPMLWPQAAPTPE---PGALSPISQHALYTRPVAPALPEP 130
AH S P P AP PE PG P+ +H VAP LP P
Sbjct: 38 AHRHSLPAPAPAPAPAPAPETHRPGIRHPVPRHHRKRPHVAPPLPPP 84
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 237 PMLWPQAAPTPEPG-ALSPISQHALYTRP--VAPALPEPP 127
P +W QA P P+P P +Q Y P APA+P P
Sbjct: 52 PQMWGQAPPPPQPAYGQPPPAQAGYYGAPPQAAPAVPAGP 91
>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
Length = 186
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -1
Query: 298 ASSSRCTLFGRLGAPHIGSSPYAMAAG----RPDSRAGRALTDLSACALHASCRSGTTGA 131
AS + C L G PH+ SP A+ R SR GRA+ L A A+ + T+G+
Sbjct: 4 ASGTSCALPGA-ARPHLAVSPSPPASSIRFCRGGSRGGRAVVSLRASVPPAAAAATTSGS 62
Query: 130 TLHDIS 113
IS
Sbjct: 63 IAPAIS 68
>09_04_0541 + 18437075-18440062
Length = 995
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = -2
Query: 333 IPFSFKFLSINXXXXXXXXXXADWAHPISAVLPMLWPQAAPTPEPGALSPISQHALYTRP 154
IP + K L+I DW++PIS + +P+P A +S AL +
Sbjct: 17 IPIATKSLTIKTTNTNGGRGGGDWSNPISPAISFSPYLNSPSPPSSAF--VS--ALQSPY 72
Query: 153 VAPALPEPP 127
V+P L +PP
Sbjct: 73 VSPRLADPP 81
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 255 PISAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEP 130
P+ ++P P AP P P A P S H Y AP P+P
Sbjct: 94 PVCKLVPFPVPYPAPPPPP-ACCPPSTHQCYHCCPAPPKPKP 134
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 261 AHPISAV-LPMLWPQAAPTPEPGALSP-ISQHALYTRPVAPALPEP 130
A P+ V P P+ AP P P L+P +SQ L R AP +PEP
Sbjct: 143 AAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAP-VPEP 187
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 395 IVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGN 541
++K +K IH+ GFT+E FK + ++ I + R + +L + N
Sbjct: 305 LLKVLKAIHKKGFTDEGFKDHALLLEKQDIDGKLGKSREVRSLTNVVKN 353
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 264 WAHPISAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPE--PPYTILAPN 106
W HP P P+AA P P L+P ++H L T + + PP AP+
Sbjct: 219 WLHP-----PKPSPRAAAPPPPPPLAPTTRHRLDTAAATATVAQRLPPSEARAPD 268
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 134 SHPTRY*HPIHEPNSTTFH*SYNPYYHFPP 45
S PT + H + +H YNPYYH P
Sbjct: 127 STPTHFWEGGHGAHPEPYHQPYNPYYHQEP 156
>06_01_0868 -
6606913-6607000,6607516-6608010,6610313-6610761,
6610863-6610979,6611892-6612863
Length = 706
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 150 RQDACRAHAERSVRARPARESGRPAAIA*GELPIWGAPSRPKSVQRLLEAN 302
++ A A + A PA + RPAA+A + G+PS P SV++ N
Sbjct: 63 KEAASLGDAGGNADASPAAPALRPAAVADADGASKGSPSTPASVKKTSRLN 113
>11_01_0307 + 2304500-2306023
Length = 507
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 514 AQLGHHLWQ*RPRKRW*DGVRRDSTDGG 597
A +GH LWQ R R+R G+ ++ T G
Sbjct: 463 AYVGHRLWQRRRRRRRAGGMEQELTSSG 490
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 258 HPISAVLPMLWPQAAPTPE-PGALSPISQHALYTRPVAPALPEP 130
+PI+ P L P PTP P L P++ + + P LP P
Sbjct: 190 NPITPAPPSLVPPVFPTPSPPSILPPLTPQPPPSSLIPPVLPLP 233
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 219 AAPTPEPGALSPISQHALYTRPVAPALPEPP 127
AAP P P SP+ +H + P P +P P
Sbjct: 64 AAPLPAPPTPSPVPEHLHHHPPPPPPVPPCP 94
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 219 AAPTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 109
A P P P A S ++ RP +P P PP+T P
Sbjct: 89 ADPMPTPAASSALAPATSSPRPASP--PTPPWTTAPP 123
>03_05_0865 - 28365430-28367640
Length = 736
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 491 LVAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEPFSEELLA 628
+V +L AMP+ + N D E D K ++ T P + E LA
Sbjct: 486 VVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLA 531
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -1
Query: 334 NTILFQVLIDQFASSSRCTLFGRL---GAPHIGSSPYAMAAGRPDSRAGRAL 188
+ +LF + FAS S + G GAP + + A A PD+RA RA+
Sbjct: 204 SALLFDITDFDFASGSTEDVIGPSQLGGAPPVQTQDQAQATPPPDTRATRAV 255
>01_01_0897 + 7070539-7071522,7071949-7072620
Length = 551
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 464 VVYSNTIQSLVAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEPFSEEL 622
+ YSNT+ + +A G G+R RE + VFD R+ TEP E L
Sbjct: 195 IAYSNTVLTRIAFGDESARGGGGGGDRGREL--RKVFDDFARLLGTEPMGELL 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,092,563
Number of Sequences: 37544
Number of extensions: 460722
Number of successful extensions: 1848
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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