Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1831
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    29   0.58 
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    27   2.3  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    27   4.1  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   5.4  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 487 EPCLFELA*PAPNQGNDTLPLNEAVY 410
           E C FEL  P  N+G DT+ L+  VY
Sbjct: 846 ETCTFELMDPVHNKGMDTVSLHVVVY 871


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -2

Query: 544 PVHL--LRQRPSYARHAQARIEPCLFELA*PAPNQGNDTLPLNEAVYLQENSETQKRQVI 371
           P+HL  LR  PS+ RH + R+E    E         ND     E V     +   + +++
Sbjct: 311 PLHLTTLRTVPSFQRHIEQRLEIGDLESINYVEKMLNDDTYFQEMVIQMCENLLYRERLL 370

Query: 370 K*I*KVWH 347
           +   K+WH
Sbjct: 371 RTQAKIWH 378


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 248 HLSLNSPPSHSQNRLEGDVNVDS 180
           HLS +S  S+S+N  +GD NV+S
Sbjct: 72  HLSFSSSCSYSENLHDGDGNVNS 94


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 528 DSVRAMRVTPKHGLNHACSNSHNRLQIKEMIHFL*MKLFIYKK 400
           D+VR+ R  P HG+      S+ R+ +   +        IY+K
Sbjct: 276 DTVRSYRFQPSHGIQGVTRPSYERIHVNFSLSSYQQDYDIYRK 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,897
Number of Sequences: 5004
Number of extensions: 58337
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)