Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1831
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809...    31   1.4  
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529...    29   3.3  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    29   4.3  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    28   9.9  

>07_03_1696 -
           28779455-28779733,28779813-28780074,28780805-28780956,
           28781765-28781961,28782258-28782462,28782737-28782982,
           28783603-28783719,28784206-28784397,28784480-28784693,
           28784835-28784926,28784952-28785001,28785494-28785812,
           28785908-28786068,28786407-28786650,28787212-28787467,
           28787634-28787834,28788568-28788910,28789003-28789064,
           28789645-28789851,28790170-28790978
          Length = 1535

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 652 KSTCFRHCKSKWIAREEDRNDIA*VVMR-FRSSGRGE 545
           +  CF    S W   + DR D+A +VMR  R SG GE
Sbjct: 50  EDVCFEVDDSTWCLSDGDRRDLAELVMRDVRISGEGE 86


>03_02_0054 +
           5292167-5292336,5292434-5292526,5292828-5293003,
           5293076-5293122,5293732-5293801,5293960-5294186,
           5294274-5294327,5294470-5294545,5294679-5294884
          Length = 372

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 607 EEDRNDIA*VVMRFRSSGRGEPVHLLRQRPS 515
           E++ +D A VV+ F   G+GEP+H+   R S
Sbjct: 288 EKECSDKANVVLPFEHQGKGEPIHIYDGRRS 318


>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
            5751816-5751993
          Length = 1572

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 373  LPGAFVFQNFLVNKQLHLKEVYHFLDLEPVMRVRTSMVQSVL 498
            LP  ++ QN    K LH+++V     L+P MR  TS+ +  L
Sbjct: 1431 LPDRWLLQNSASLKSLHIRKVKSLESLQPSMRDLTSLQKLTL 1472


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 31   RHHGPECSSVTFLKRKVLFESLELNCSEVK 120
            R  G E  SV  LKR  L ESL   C+  K
Sbjct: 1020 RAAGEEAKSVEILKRDKLIESLSAKCAAAK 1049


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,954
Number of Sequences: 37544
Number of extensions: 365512
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)