Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1830
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 41 0.001
03_06_0182 - 32182202-32182272,32182351-32182468,32182734-321828... 36 0.034
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 32 0.56
04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800 31 0.74
06_01_1013 - 7931756-7935109 29 3.9
11_06_0310 + 22274762-22275412,22275515-22275725,22276713-222773... 28 6.9
07_03_1016 - 23313210-23313827,23314649-23314717 28 6.9
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 28 6.9
04_04_1222 - 31848892-31849347 28 9.1
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 41.1 bits (92), Expect = 0.001
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Frame = +1
Query: 184 APGEDGIPSLAFFHFPETVVSYMTRXFNSILSTGHFPGIWKLGKVIALPKPGKDRR-NPS 360
+PG DG P+ + T+ S + + +G P ++ +PK KD+ +
Sbjct: 908 SPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPK--KDQPIDLK 965
Query: 361 SYRPITLLSHVGKLXERLLLRXMSPHI--LLRPEQXGFRXGHSTT---LQLVRVMHHLAD 525
YRPI+L + V K+ + L+ + P + L+ EQ F G T L H +
Sbjct: 966 DYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQK 1025
Query: 526 RTNARXYTAAVFLDIXXAFDR 588
A A LD+ A+DR
Sbjct: 1026 NKKANSAACAYKLDLSKAYDR 1046
>03_06_0182 -
32182202-32182272,32182351-32182468,32182734-32182829,
32182940-32183047,32183135-32183204,32183346-32183473,
32183570-32183755
Length = 258
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 311 ARLSPCPNPARTGEIPPVTVRSRCCR 388
ARL PCP P R G + P TVR R R
Sbjct: 14 ARLRPCPRPRRIGNVAPATVRRRSRR 39
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -1
Query: 318 NLAQFPNSREVSCGQNGVEXPCHI*HDRLREVEKSEGGNTVLARRLA 178
N++Q P ++ NG+E + + E+ +S+GG+ V+ R++A
Sbjct: 289 NISQIPELSAINRSSNGIEIGAAVSISKAIEILRSDGGDAVVFRKIA 335
>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
Length = 456
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -1
Query: 192 ARRLAPLHPLDDEAQFAGSDEITISQRWHRGGE*AXYALFHRLVECGLL 46
AR LAP D A FA ++E+ R G+ A YA FH CG+L
Sbjct: 371 ARDLAPPGSYIDGAAFASAEELAAYVR-EVAGDPAAYAEFHAWRRCGVL 418
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 342 LAGFGQGDNLAQFPNSREVSCGQNGVEXPCHI*H 241
L G +L Q P +++ CGQ+G + CH H
Sbjct: 520 LEGGNWDPHLCQIPCGKKLRCGQHGCQLLCHSGH 553
>11_06_0310 +
22274762-22275412,22275515-22275725,22276713-22277388,
22277739-22277816,22278228-22278573
Length = 653
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 339 AGFGQGDNLAQFPNSREVSCGQNGVEXPCH 250
+G+G+GD++A N + +CG G+ H
Sbjct: 39 SGYGKGDSIAMAVNRQTAACGGVGLSFETH 68
>07_03_1016 - 23313210-23313827,23314649-23314717
Length = 228
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 171 EEAQGAGRGRYSLPRFFPLP*DGRVIYDTXVQLHSVHRTLPGNLEIGQGYRL 326
+ A G GR +L F + D +L VHRTL G+ + Q YR+
Sbjct: 95 DAAAGGGRRDLTLQHRFSRMLGSAHLVDNNGELLLVHRTLSGDKRLYQAYRV 146
>03_05_0834 -
28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 399 LAHVRQQRDRTVTGGISPVLAGFGQGDNLAQFPNSREVSCGQN 271
+AH+R+ +DR+ G I+P QGD+ A+ + +CG N
Sbjct: 493 IAHLRRSKDRSFAGVIAPFSEKSVQGDSRAK-KSLFNSNCGFN 534
>04_04_1222 - 31848892-31849347
Length = 151
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 118 PTVAPGRRVGLXRSLPPIGGMRPPEGAE 35
PT P RR+GL PP G++ E E
Sbjct: 77 PTPPPRRRLGLPHPQPPYSGVQATESME 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,362,548
Number of Sequences: 37544
Number of extensions: 442398
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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