Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1830
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 89 2e-18
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 60 1e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 60 1e-09
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 29 4.7
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 6.2
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 89.4 bits (212), Expect = 2e-18
Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 3/185 (1%)
Frame = +1
Query: 127 DLITPSEXXXXXXXXXXXXAPGEDGIPSLAFFHFPETVVSYMTRXFNSILSTGHFPGIWK 306
D IT E A G DGI + P S++ +N LST P WK
Sbjct: 326 DRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWK 385
Query: 307 LGKVIALPKPGKDRRNPSSYRPITLLSHVGKLXERLLLRXMSPHILLRPEQXGFRXGHST 486
VI +PKP KD SSYRPI+LLS + KL E+ +L+ + I Q GF+ HST
Sbjct: 386 KANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPAHQHGFKPEHST 445
Query: 487 TLQLVRVMHHLADRTNAR---XYTAAVFLDIXXAFDRXWHAGLIHKLLQXTDLXHAYVRL 657
T +++V + + N + LD+ AFD+ L + L++ +
Sbjct: 446 TTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLW 505
Query: 658 LGSYL 672
LG+YL
Sbjct: 506 LGNYL 510
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 60.5 bits (140), Expect = 1e-09
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Frame = +1
Query: 184 APGEDGIPSLAFFHFPETVVSYMTRXFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSS 363
A G+D I + + V+ +T FN L + + P WK K + K G DR N +
Sbjct: 393 AAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKG-DRENLEN 451
Query: 364 YRPITLLSHVGKLXERLLLRXMSPHI-LLRP-EQXGFRXGHSTTLQLVRVMHHLADRTNA 537
YRPI LL + K+ + LL M + +P EQ GFR ST + + L
Sbjct: 452 YRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGREY 511
Query: 538 RXYTAAVFLDIXXAFDRXWHAGLIHKLLQXTDLXHAYVRLL 660
+ VF+D AFD H I K L AY+ LL
Sbjct: 512 QIPLTLVFIDFKKAFDTVEHQA-IWKSLDEQGADGAYIDLL 551
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 60.5 bits (140), Expect = 1e-09
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Frame = +1
Query: 184 APGEDGIPSLAFFHFPETVVSYMTRXFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSS 363
A G+D I + + V+ +T FN L + + P WK K + K G DR N +
Sbjct: 564 AAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKG-DRENLEN 622
Query: 364 YRPITLLSHVGKLXERLLLRXMSPHI-LLRP-EQXGFRXGHSTTLQLVRVMHHLADRTNA 537
YRPI LL + K+ + LL M + +P EQ GFR ST + + L
Sbjct: 623 YRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGREY 682
Query: 538 RXYTAAVFLDIXXAFDRXWHAGLIHKLLQXTDLXHAYVRLL 660
+ VF+D AFD H I K L AY+ LL
Sbjct: 683 QIPLTLVFIDFKKAFDSVEHQA-IWKSLDEQGADGAYIDLL 722
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 60.5 bits (140), Expect = 1e-09
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Frame = +1
Query: 184 APGEDGIPSLAFFHFPETVVSYMTRXFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSS 363
A G+D I + + V+ +T FN L + + P WK K + K G DR N +
Sbjct: 303 AAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKG-DRENLEN 361
Query: 364 YRPITLLSHVGKLXERLLLRXMSPHI-LLRP-EQXGFRXGHSTTLQLVRVMHHLADRTNA 537
YRPI LL + K+ + LL M + +P EQ GFR ST + + L
Sbjct: 362 YRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGREY 421
Query: 538 RXYTAAVFLDIXXAFDRXWHAGLIHKLLQXTDLXHAYVRLL 660
+ VF+D AFD H I K L AY+ LL
Sbjct: 422 QIPLTLVFIDFKKAFDSVEHQA-IWKSLDEQGADGAYIDLL 461
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 184 APGEDGIPSLAFFHFPETVVSYMTRXFNSILSTGHFPGIWKLGKVIALPKPG 339
A G D I + + V+ +T FN L +G+ P WK K + K G
Sbjct: 413 AAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKTSKTTLIFKKG 464
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 278 PQDTSREFGNWARLSPCPNPARTGEIPP 361
PQD S E GN +R P P P TG PP
Sbjct: 82 PQDLSAEEGNASRRPP-PPPKGTGTPPP 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,824
Number of Sequences: 27780
Number of extensions: 307721
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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