Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1827
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    70   3e-13
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 39/101 (38%), Positives = 49/101 (48%)
 Frame = +3

Query: 237 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 416
           +A+PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL 
Sbjct: 99  VAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQ 158

Query: 417 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 539
           L GISS                   S  Q+PLF  A+ IT+
Sbjct: 159 LTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITS 199



 Score = 33.5 bits (73), Expect = 0.033
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 605 KTLNTSFFXPAGGGRPQFLYQPFILIFWTXWKFYFLILP 721
           + LNTSF+ P GGG P  LYQ  +  F+   + Y LI+P
Sbjct: 220 RNLNTSFYAPEGGGDP-VLYQ-HLFWFFGHPEVYILIMP 256



 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 116 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPVYSIP 247
           Q+YN  ++AH                  N LVPL++GAP  + P
Sbjct: 59  QLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYP 102


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 11  GTXXFDAGNNWXHXXXTFNSXXN*XNPG 94
           G   FD+GN+W     T     N  NPG
Sbjct: 572 GERHFDSGNDWHGNPSTVPPPTNPYNPG 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,783
Number of Sequences: 5004
Number of extensions: 31287
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)