Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1826
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   3.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   7.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   9.5  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.5  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 588 TEHTRSAEWSRRIKDRPP--QAVPLVFRDNTPHSN*LAGSEWR*TXGSVT 731
           T  TRS EW RR +  PP     P   R NT  S      +   T GS++
Sbjct: 470 TAFTRSREWRRRYRVAPPAENEKPHTSRTNTASSLSSTSEDQVSTHGSIS 519


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 610  NGRGVSRTGRPKRCRWCSEITRRTQTSLLGRNGDEPXDRS 729
            NG+ + + G P +    S +TR  +T+L  RNG    D S
Sbjct: 1371 NGKKLDK-GLPPKVNGKSSVTRGNKTNLKARNGRNNDDSS 1409


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 320 RRVPNVNVFF*LFLKNTLNQ*KKHYTSYHVFDNTHAYYLFTDKLFLLLIVL 168
           + +P +N    L ++N  +  K      HVF N    Y+F   L+L+  +L
Sbjct: 358 KSLPGINAPSVLSMENDFSTKKMSSNIGHVFQNETVKYVFPTPLYLVSDIL 408


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 651 APLGAACP*YASTIPPTGYVQCELRV 574
           APL  AC  +A   P  G+V C + +
Sbjct: 316 APLKFACGWFAFIFPNVGFVNCTIEI 341


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 49  YYCYIIKGHSTYLITDFANSTL*TNINKDKQYLIYSQFDHXTISNKKSLSVN 204
           +Y +  K +S +    ++ ST   N N    Y IY+         K S S+N
Sbjct: 406 HYLFYSKKYSQFYTPGYSFST--PNFNTRTLYAIYASLHDQAFHKKNSFSIN 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,497
Number of Sequences: 5004
Number of extensions: 65629
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)