Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1826
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591...    29   3.3  

>03_02_0146 +
           5916692-5917931,5918198-5918261,5918836-5919057,
           5919626-5919747,5920105-5920170,5920192-5920386,
           5920480-5921057,5921818-5921968,5922465-5922715
          Length = 962

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 620 PRPFRRPGMFSVNCESGLTRSPATLPKSR 534
           PRP  RP +F   C+ G  +S   +P S+
Sbjct: 340 PRPSSRPNLFDTKCKVGSPQSETIIPPSQ 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,078,544
Number of Sequences: 37544
Number of extensions: 431879
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)