Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1826
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    29   3.9  
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 662 EHQRHRLGRPVLDTPRPFRRPGMFSVNCESGLTRS--PATLPKSRIW 528
           +H+ HR   P L + +  R+P     N  S  T S  P+T P+ R++
Sbjct: 603 QHRNHRESSPSLRSTQEIRKPSRNMGNRPSSSTGSYYPSTTPRQRVY 649


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 388 PYTPFYENCADRRLLNYTLIQNIEECRMLMFFFNY 284
           PY P+Y NC +      TL+Q++E    ++F+ ++
Sbjct: 13  PYEPYYLNCTN-TTNQCTLVQDVETIESIIFWIDF 46


>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 662 EHQRHRLGRPVLDTPRPFRRPGMFSVNCE 576
           +++ H + R  +D PR   RPG+  + CE
Sbjct: 6   DYRPHEVERYPVDLPRQHPRPGILDIRCE 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,284
Number of Sequences: 27780
Number of extensions: 377070
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)