Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1822
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0328 - 16805296-16806121,16806493-16807274                       28   7.5  
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545...    28   9.9  
12_02_0266 - 16582912-16584918,16585041-16585229                       28   9.9  
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    28   9.9  
05_01_0514 - 4270936-4272084                                           28   9.9  

>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 201 VNVKEIVGRVASAQKRIISSSLLLQSTNG--SRVKVKISFIPGLLWLQPHDSRLAARFEL 374
           +N     G + ++  R++S + L    NG    +  +I  + GL+ L+ +++        
Sbjct: 101 LNGNNFTGAIPASISRLVSLASLDLGNNGFVGSIPSQIGDLSGLVELRLYNNNFVGNIPH 160

Query: 375 CCSWFAVSVESQIGNSSIHNPKSK*F 452
             SW        +GN+ + NP  + F
Sbjct: 161 QLSWLPKITHFDLGNNWLTNPDYRKF 186


>12_02_0715 - 22453747-22453935,22454347-22454457,22454514-22454572,
            22454893-22455067,22455255-22455307,22455670-22455739,
            22457044-22457218,22457639-22457703,22458196-22460826
          Length = 1175

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 313  SFQGYCGFNLMTRDWQPGSN 372
            +FQ Y G     RDW+PG N
Sbjct: 1030 TFQEYSGMETYERDWRPGLN 1049


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 316 MKLIFTFTREPLVLCSRRLEDIILF 242
           MK++    REP ++C+ R E +++F
Sbjct: 1   MKMLNLHNREPFLICNGRYESVLIF 25


>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 176 YQRHWLLVCKCKRNCRARCERPKEDNIFQPSTAKYQRFPCESKDQLHS 319
           +Q+H+L+  + +R  R  C R ++D I +      Q+F  + K + HS
Sbjct: 406 HQKHYLVTPEIRRELRMSCNRGEKDTIMRNG----QQFAVDLKIRSHS 449


>05_01_0514 - 4270936-4272084
          Length = 382

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 349 RDWQPGSNCAAHGLLYPL 402
           RDW PGS C + G LY L
Sbjct: 257 RDWLPGSICQSEGKLYYL 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,780
Number of Sequences: 37544
Number of extensions: 342658
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)