Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1822
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine re...    28   6.8  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   8.9  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   8.9  
AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 448 DFNVNYEN--ITDRYVHLVIFNSKMCPWNVYNSIRSVSL 558
           +FN N  N  ++ R   L  FNS  CP+  +N IR+ S+
Sbjct: 48  EFNKNIHNAPLSLRENTLFAFNSSNCPYKEWNQIRTDSI 86


>AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 30 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 418 TRLFITLNPNDFNVNYENITDRYVHLVIFNSKMCPWNVYNSIRSVSLLLIAI 573
           T +F+ + PN  N +       + +L+I+     PW+   S RS+  L IA+
Sbjct: 64  TIIFLQIKPNTINTDNLEFMSEHRNLLIYLG--LPWSNIASCRSIVALAIAV 113


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 328  NSPGMKLIFTFTREPLVLCSRRLEDIILFWALATRPTIS 212
            NS G     TF     V+C RR + +I+  ALAT  T S
Sbjct: 1821 NSQGQWTSSTFGVVTSVICQRRSDTVIVTTALATTTTTS 1859


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 328  NSPGMKLIFTFTREPLVLCSRRLEDIILFWALATRPTIS 212
            NS G     TF     V+C RR + +I+  ALAT  T S
Sbjct: 1821 NSQGQWTSSTFGVVTSVICQRRSDTVIVTTALATTTTTS 1859


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 328  NSPGMKLIFTFTREPLVLCSRRLEDIILFWALATRPTIS 212
            NS G     TF     V+C RR + +I+  ALAT  T S
Sbjct: 1821 NSQGQWTSSTFGVVTSVICQRRSDTVIVTTALATTTTTS 1859


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 328  NSPGMKLIFTFTREPLVLCSRRLEDIILFWALATRPTIS 212
            NS G     TF     V+C RR + +I+  ALAT  T S
Sbjct: 1821 NSQGQWTSSTFGVVTSVICQRRSDTVIVTTALATTTTTS 1859


>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 23  VSVRVNNKIIEHLLCIFYSIINLHKNVNEAY*RHNQI 133
           +S++ N++I+  ++CI   IIN+  + +E Y   N I
Sbjct: 179 LSLQNNSRIVVDIICIDKRIINIRVSCSEDYCHRNDI 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,061,832
Number of Sequences: 27780
Number of extensions: 356815
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)