Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1822
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.82 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 433 TLNPNDFNVNYENITDRYVHLVI 501
           TLN  +FN+NY N    Y H +I
Sbjct: 52  TLNELNFNLNYVNKGVTYKHTII 74


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 675 INFTTYIFSIYTGII 631
           IN   YI+S+YT +I
Sbjct: 135 INEAQYIYSLYTAVI 149


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 675 INFTTYIFSIYTGII 631
           IN   YI+S+YT +I
Sbjct: 135 INEAQYIYSLYTAVI 149


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 628 YYYTSINTKNVCGKIYNQYTYV 693
           Y Y + N  N C K+Y    Y+
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 628 YYYTSINTKNVCGKIYNQYTYV 693
           Y Y + N  N C K+Y    Y+
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 628 YYYTSINTKNVCGKIYNQYTYV 693
           Y Y + N  N C K+Y    Y+
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 628 YYYTSINTKNVCGKIYNQYTYV 693
           Y Y + N  N C K+Y    Y+
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,210
Number of Sequences: 438
Number of extensions: 5059
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)