Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1820
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       42   4e-04
11_04_0234 + 15187065-15188241,15188316-15188494                       34   0.14 
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    29   3.0  
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    28   6.9  
10_08_0812 + 20752637-20752784,20752856-20753034,20754043-207541...    28   9.1  
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311     28   9.1  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = +3

Query: 78  YTAPIYTPQNRNPLXNADAAVTYWLTSGAPSQKIXLSIATFGRTWKLDADSEIAGVPPIH 257
           + AP+Y   +R    +A   V  WL +G P+ K+ + I  +GR+W L   +      P+ 
Sbjct: 248 FDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVV 304

Query: 258 TDGPGETGPYVKTEGLLSYPE 320
             GP + G      G +SY E
Sbjct: 305 AAGPKQRGS--NATGAMSYAE 323


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  APIYTPQNRNPLXNADAAVTYWLTSGAPSQKIXLSIATFGRTWKL-DADSEIAGVP 248
           AP+Y   +++   +A   V  WL +G P  K+ + I  FGR+W L + D    G P
Sbjct: 249 APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP 301


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 548 NDRSTIATPPXFFDLX*AAXWPAVSGSSYDTQMPPSPLSSGRRKA 414
           +D   + T P    L   A   A  GS   T  PPSP   GRR++
Sbjct: 537 SDNGGMMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 307 SKPSVLTYGPVSPGPS---VWIGGTPAISLSASSFQVRPKV 194
           ++P +   G V  GP+   +W+GGTP  S  A +F  + K+
Sbjct: 578 ARPYMAEVGFVGDGPNSYQIWLGGTPNQSTLAETFMNKVKL 618


>10_08_0812 +
           20752637-20752784,20752856-20753034,20754043-20754126,
           20754835-20755002,20757120-20757266
          Length = 241

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -3

Query: 307 SKPSVLTYGPVSPGPSVWIGGTPAISLSASSFQVRPKVAIDNXIFWLGAPLVSQYVTAA- 131
           + PS  +  PV+P    W GG      +A  F  R   A+   +F     +V     +A 
Sbjct: 3   ASPSSSSSSPVAPEVVQWAGGADGFGSAAIGFACRVLCAVATCVFAAVGSVVGAVTGSAI 62

Query: 130 -SAXXSGLRFCGV*IGAV 80
             A  SG+   G  IGA+
Sbjct: 63  GLATESGM-LRGAGIGAI 79


>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
          Length = 705

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 320 FWVTEQTFSLNVWSSFAGTISVDWRDSRN 234
           F+ T+   ++ VW + A +I+V W  SRN
Sbjct: 54  FYATDGGLAVGVWLATAPSITVTWTASRN 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,589,087
Number of Sequences: 37544
Number of extensions: 358171
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)