Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1820
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   9.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  ADYTAPIYTPQNRNPLXNADAAVTYWLTSGAP 167
           A +TAPIYT + +  + + + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  ADYTAPIYTPQNRNPLXNADAAVTYWLTSGAP 167
           A +TAPIYT + +  + + + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  ADYTAPIYTPQNRNPLXNADAAVTYWLTSGAP 167
           A +TAPIYT + +  + + + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
 Frame = +3

Query: 183 LSIATFGRTWKLDADSEIAGVP---------PIHTDGPGETGPYVKTEGL 305
           LSI + G  W++   SE   +P         P+H  G    GP V   G+
Sbjct: 33  LSIYSGGSDWRVAGRSESVVIPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 250 QSTLMVPAKLDHTLRLKVCSVTQXSAVSVINPNQQ 354
           Q T   PAK    +  K  +V + SA S++  NQQ
Sbjct: 882 QITTNTPAKKATNIGGKPVAVVKSSAQSLLQSNQQ 916


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 262 SVWIGGTPAISLS 224
           SVWIGG+   SLS
Sbjct: 113 SVWIGGSILASLS 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,772
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)