Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1819
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.8  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   7.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   9.5  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 129  YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 37
            + RTT    AHLQ  R+L  +A  E+  IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 211 SIFKYGSYLTTSRQSPS-VVRRKYSS 137
           +IF YGSY+ TS    S +++R YS+
Sbjct: 311 AIFMYGSYILTSHPDNSLILQRLYST 336


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 532 LHTN*ITRSYRNDKERCFLTVY*CSFQTYMYESLTLINYYK 410
           L  N ++    N+  R FL +Y C F       + L NY++
Sbjct: 797 LKINTLSMKSLNNSSRKFLELYQCFFYVLQTNEMYLANYFQ 837


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 294 TYIGIILVAERYDITKYSVDNESERGRYLYSNMA 193
           ++ G  +  + YD+TK S   + E  RY YS+++
Sbjct: 386 SFNGHSVSVQEYDLTKDSTIRKFEAARYSYSSVS 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,361
Number of Sequences: 5004
Number of extensions: 61892
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)