Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1819
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ...    30   1.7  
U23510-7|AAC46785.1|  261|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical
           protein F14F4.3b protein.
          Length = 1427

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 275 WLPSGTTLRNTLSTTKANVEGIYIQI--WQLPDDIAAVTFGGETEIFIGGSTVA 120
           W+ +GT   N L   K N E  Y  +   QL +D+  ++ G  TE+   G+T++
Sbjct: 557 WIFNGTVQDNILFGDKMNSERYYKAVNGCQLTEDLTTLSVGDRTEVGERGATLS 610


>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical
           protein F14F4.3a protein.
          Length = 1400

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 275 WLPSGTTLRNTLSTTKANVEGIYIQI--WQLPDDIAAVTFGGETEIFIGGSTVA 120
           W+ +GT   N L   K N E  Y  +   QL +D+  ++ G  TE+   G+T++
Sbjct: 557 WIFNGTVQDNILFGDKMNSERYYKAVNGCQLTEDLTTLSVGDRTEVGERGATLS 610


>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
           protein F14F4.3b protein.
          Length = 1427

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 275 WLPSGTTLRNTLSTTKANVEGIYIQI--WQLPDDIAAVTFGGETEIFIGGSTVA 120
           W+ +GT   N L   K N E  Y  +   QL +D+  ++ G  TE+   G+T++
Sbjct: 557 WIFNGTVQDNILFGDKMNSERYYKAVNGCQLTEDLTTLSVGDRTEVGERGATLS 610


>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
           protein F14F4.3a protein.
          Length = 1400

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 275 WLPSGTTLRNTLSTTKANVEGIYIQI--WQLPDDIAAVTFGGETEIFIGGSTVA 120
           W+ +GT   N L   K N E  Y  +   QL +D+  ++ G  TE+   G+T++
Sbjct: 557 WIFNGTVQDNILFGDKMNSERYYKAVNGCQLTEDLTTLSVGDRTEVGERGATLS 610


>U23510-7|AAC46785.1|  261|Caenorhabditis elegans Hypothetical
           protein R12C12.6a protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 271 NQYYTYVCKNE*KTNPNSTFFKDEVFHIF 357
           ++++ + CKN+ K +P S  F D + ++F
Sbjct: 25  SEHFLFSCKNKKKYSPTSVIFSDLMIYLF 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,837
Number of Sequences: 27780
Number of extensions: 347289
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)