Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1818
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   175   4e-45
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   175   4e-45
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   175   4e-45
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   132   7e-32
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   5.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   6.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.7  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.7  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  175 bits (427), Expect = 4e-45
 Identities = 86/102 (84%), Positives = 92/102 (90%)
 Frame = -2

Query: 739 GSQEAXSLXPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 560
           G ++     PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 35  GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94

Query: 559 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 434
           EA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 95  EAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  175 bits (427), Expect = 4e-45
 Identities = 86/102 (84%), Positives = 92/102 (90%)
 Frame = -2

Query: 739 GSQEAXSLXPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 560
           G ++     PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 35  GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94

Query: 559 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 434
           EA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 95  EAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  175 bits (427), Expect = 4e-45
 Identities = 86/102 (84%), Positives = 92/102 (90%)
 Frame = -2

Query: 739 GSQEAXSLXPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 560
           G ++     PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 35  GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94

Query: 559 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 434
           EA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 95  EAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  132 bits (318), Expect = 7e-32
 Identities = 67/96 (69%), Positives = 81/96 (84%), Gaps = 6/96 (6%)
 Frame = -2

Query: 712 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEAS 551
           PGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS A+  LQEA+
Sbjct: 24  PGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAA 83

Query: 550 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 443
           EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 84  EAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -2

Query: 730 EAXSLXPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIG 569
           EA  L     +L E + +++ S  LLI   P Q  +RE+A   DF    +F   +   + 
Sbjct: 509 EAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLE 568

Query: 568 ALQEASEAYLVGLFE 524
           A  E  EAY+  L E
Sbjct: 569 APDEEQEAYIRSLQE 583


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 473 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 649
           LR+   T  +    + +  QA        LE S     + Q+ SFEIL     +TLE   
Sbjct: 73  LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132

Query: 650 TDKQLSR 670
           ++  +SR
Sbjct: 133 SNPNISR 139


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 512 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 688
           Q+G F +AN I  A  + +      E +   EIL        ER L+ K+ +R   T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 700 ALREIRRYQKSTELLIRKLPFQR 632
           A RE+++ ++  EL++  LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 11  FRSKLDLFNTKYSITHYESVQTQITHTHVWLGN 109
           F+ KLD+     ++TH   +Q  I  +  W+GN
Sbjct: 443 FQHKLDVLTAYSNVTHALEIQVNIIRS--WVGN 473


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 557 LLESSDGGRLETQISFEILSD 619
           L  + DGG+LE Q+ +++L D
Sbjct: 72  LFTTDDGGKLELQVYYQLLVD 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,732
Number of Sequences: 5004
Number of extensions: 53840
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)