Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1818
         (749 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     188   1e-49
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       146   6e-37
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            27   0.82 

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  188 bits (459), Expect = 1e-49
 Identities = 94/102 (92%), Positives = 96/102 (94%)
 Frame = -2

Query: 739 GSQEAXSLXPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 560
           G ++     PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ
Sbjct: 35  GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 94

Query: 559 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 434
           EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 95  EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  146 bits (354), Expect = 6e-37
 Identities = 72/83 (86%), Positives = 76/83 (91%)
 Frame = -2

Query: 739 GSQEAXSLXPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 560
           G ++     PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQ
Sbjct: 33  GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQ 92

Query: 559 EASEAYLVGLFEDTNLCAIHAKR 491
           EASEAYLVGLFEDTNLCAIHAKR
Sbjct: 93  EASEAYLVGLFEDTNLCAIHAKR 115


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 578 GRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTNFTKGHCTRA*RXGFLT 736
           G + T  +F +LSD +   L    TD QLS + +  N       +A   G+ T
Sbjct: 803 GTITTGSAFVLLSDKTSLRLITTTTDHQLSEVELRPNLPANFVVKAFAHGYAT 855


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,848
Number of Sequences: 2352
Number of extensions: 12318
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)