Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1814
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 33 0.26
11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754 32 0.61
11_06_0385 + 22998153-22998329,22999642-22999823,23004817-230051... 29 3.3
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928... 29 5.7
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 29 5.7
07_01_0136 - 992662-992821,992879-993051 29 5.7
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 5.7
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784 28 7.5
02_05_1146 - 34440647-34441674,34442138-34443896 28 7.5
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 28 9.9
03_02_0492 - 8861472-8861517,8862672-8862781,8862889-8863059,886... 28 9.9
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 534 CRVEIFFPRKKQGNIQHYRIVKLCCECCYMLSS*LPNLQFQRSL 403
C E + K GN+ H R ++L C C L + + NLQF ++L
Sbjct: 598 CHFEESYHLKHLGNLFHLRYLRLHCGCITKLPNEIGNLQFLQTL 641
>11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754
Length = 310
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 362 IRTSNHRTSGDAYFTMSVDVSAILHHGPEMWERLSNSVVQPSSE 231
+R +H+TS D T+ LHH ++ +N+VVQPS +
Sbjct: 252 LRQKDHQTSDDIMITLDKLQQIALHHMKDIACHQANNVVQPSDQ 295
>11_06_0385 +
22998153-22998329,22999642-22999823,23004817-23005189,
23005391-23005627,23006380-23006616
Length = 401
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 81 GEYPGPIYDNPSDHDNLKLIT-DPSLVSHVSKLLVPGF 191
G GP YD HD +K +T D ++ V+ ++VP F
Sbjct: 132 GTVRGPKYDGSFLHDKIKSLTHDVTIADTVTNIVVPAF 169
>11_06_0384 +
22990773-22990949,22991315-22991496,22992533-22992887,
22993124-22993426,22994077-22994313
Length = 417
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 81 GEYPGPIYDNPSDHDNLKLIT-DPSLVSHVSKLLVPGF 191
G GP YD HD +K +T D ++ + V+ ++VP F
Sbjct: 132 GVVRGPKYDGSFLHDKIKSLTHDVTISNTVTNIVVPAF 169
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 366 EFKSCGRRYKHEKANVEIEDLAI 434
E++SCGR H+KA VE L +
Sbjct: 207 EYRSCGRSMLHKKAKVEFYPLGV 229
>07_01_0136 - 992662-992821,992879-993051
Length = 110
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 120 HDNLKLITDPSLVSHVSKLLVPGFQEFTLTDK 215
H N KL+ +P H S L+ QE TL DK
Sbjct: 74 HTNSKLLPNPLPNKHTSSSLLINVQELTLKDK 105
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 450 SNTHNTTLQCDNVVYYPVSFGEKKFPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNKPQ 629
S H+ C+ +V P+S+GE K P + Y + + + +T R+ L + P
Sbjct: 733 SMKHSDYNFCNKIVQIPLSYGEDK-PRSKRIY--KHQNRNNNNIRTKKRYFLRRPVRLPF 789
Query: 630 KDLMG 644
K+++G
Sbjct: 790 KEILG 794
>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
Length = 1095
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 66 PXQVSGEYPGPIYDNPSDHDNLKLITDPSLVSHV 167
P V+ +PGP++D PS L + P L S++
Sbjct: 639 PAGVTPSHPGPLFDVPSPRPAQDLKSMPDLASYI 672
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 27 RPRAFSSPEYRKFPXQVSGEY-PGPIYD 107
R + F+ P YRKF + +G Y P P YD
Sbjct: 293 RQKDFTFPSYRKFRSKEAGLYLPDPAYD 320
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 27.9 bits (59), Expect = 9.9
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +3
Query: 81 GEYPG-PIYDNPSDHDNLKLITDPSLVSHVSKLLVPGFQEFTLTDKDVSCTFRARLNYGI 257
G PG P+ +PS N+ T P S VS +V G + S T +R +
Sbjct: 787 GSAPGLPVSSSPSFSSNVA--TRPISTSSVSMKIVQGLVASKSCIQASSRTGDSRSL--L 842
Query: 258 GETFPHFRAVVQDGANIYAHREIGVAACSVVACSNN 365
GE A++ DG N+ + E +C ++A N
Sbjct: 843 GEHHNRSPAMIHDGTNMKSSLESSNNSCRLIASDYN 878
>03_02_0492 -
8861472-8861517,8862672-8862781,8862889-8863059,
8863158-8863262,8863342-8863431,8863719-8863813,
8863933-8864101,8864193-8864345,8864562-8864639,
8864883-8864957,8865076-8865098,8865181-8865268,
8865397-8865432
Length = 412
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 336 ACSVVACSNNEFKSCGRRYKHEKANVEIEDLAIKMTTYSNTHNTTLQCDNVVYYPVSF 509
A +V N+ K C ++ +E+ +E L ++ T T NTT+Q D +SF
Sbjct: 294 AVAVTMQWENQVKDCLKQ--NEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISF 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,194,288
Number of Sequences: 37544
Number of extensions: 441050
Number of successful extensions: 1137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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