Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1814
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    34   0.14 
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    31   0.96 
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu...    30   1.7  
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu...    30   1.7  
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR...    30   1.7  
Z99281-30|CAH60779.1|  164|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu...    29   5.1  
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu...    29   5.1  
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO...    29   5.1  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   8.9  

>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 396 HEKANVEIEDLAIKMTTYSNTHNTTLQCDNVVYYPVSFGEKKFPLDTKNYTFTKEKSQDK 575
           +EK   E+ED+A K+ ++ N+  +    D V     +  + +F  DTK  T T EKS++K
Sbjct: 157 YEKLKNELEDIACKIVSHLNSGESG--ADRVAIVLQADYKSEFGKDTKGKTNTTEKSEEK 214


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 307 MLAPSCTTARKCGNVSPIP*FS-LALNVQLTSLSVSVNSWK 188
           ++ P CT    C  + P+P FS   L + L S  ++VN WK
Sbjct: 105 VICPFCTRTHFCNTIHPLPFFSENHLLIILCSSLITVNLWK 145


>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform b protein.
          Length = 1328

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 444 TYSNTHNTTLQCDNVVYYPVSFGEKKFPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           T S++H ++ +   + ++ V+  E  F  D + YT T E  + KDYK GN++ L    NK
Sbjct: 188 TISSSHISSNEQGTLFFHYVN--ETDFKSD-RYYTCTAENIELKDYKFGNQFSLQITNNK 244


>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform c protein.
          Length = 1331

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 444 TYSNTHNTTLQCDNVVYYPVSFGEKKFPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           T S++H ++ +   + ++ V+  E  F  D + YT T E  + KDYK GN++ L    NK
Sbjct: 188 TISSSHISSNEQGTLFFHYVN--ETDFKSD-RYYTCTAENIELKDYKFGNQFSLQITNNK 244


>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
           protein.
          Length = 1331

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 444 TYSNTHNTTLQCDNVVYYPVSFGEKKFPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           T S++H ++ +   + ++ V+  E  F  D + YT T E  + KDYK GN++ L    NK
Sbjct: 188 TISSSHISSNEQGTLFFHYVN--ETDFKSD-RYYTCTAENIELKDYKFGNQFSLQITNNK 244


>Z99281-30|CAH60779.1|  164|Caenorhabditis elegans Hypothetical
           protein Y57G11C.50 protein.
          Length = 164

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 522 FPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           F +  + YT T E  + KDYK+GN++ L    NK
Sbjct: 30  FLVSDRYYTCTAENIRLKDYKSGNQFSLQITNNK 63


>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 581 IVFVL*FFFGERIVFSVEWKFFFPERNRVIYNIIAL*SC---VVSVAICCHLDCQIFN 417
           +V ++ F+   RIV S   K  FP+  +VIY II    C     +V IC H   + FN
Sbjct: 108 LVIIIGFYRSLRIVSSKAGKLIFPD--KVIYVIIIGVFCFSFFFTVNICAHTTIRRFN 163


>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform a protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 522 FPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           F +  + YT T E  + KDYK GN++ L    NK
Sbjct: 27  FLVSDRYYTCTAENIELKDYKFGNQFSLQITNNK 60


>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform d protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 522 FPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           F +  + YT T E  + KDYK GN++ L    NK
Sbjct: 27  FLVSDRYYTCTAENIELKDYKFGNQFSLQITNNK 60


>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
           protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 522 FPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNK 623
           F +  + YT T E  + KDYK GN++ L    NK
Sbjct: 27  FLVSDRYYTCTAENIELKDYKFGNQFSLQITNNK 60


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 345 VVACSNNEFKSCGRRYK---HEKANVEIEDL--AIKMTTYSNTHNTTLQCDNVVYYPVSF 509
           ++  S+ +F+S G+ Y    H+    E+ D+  AIK  +  ++   T+  D+V Y P+  
Sbjct: 411 IMLLSHRDFQSSGKLYGPVFHKDIFEELFDILNAIKNISTQDSDGRTITLDDVCYRPMGP 470

Query: 510 GEKKFPLDTKNY 545
           G     +   NY
Sbjct: 471 GYDCLIMSPTNY 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,088
Number of Sequences: 27780
Number of extensions: 402552
Number of successful extensions: 1042
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)