Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1813
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    29   0.71 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    28   1.6  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   6.6  

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 669 YSVA*SVQFELLIFGNLIFFTEIQHYSLPLY 577
           Y  + S+ F L++    IFF     YSLPLY
Sbjct: 346 YGASISIFFALILLRTAIFFFGTDRYSLPLY 376


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 51  YSINKTRVGHVVRHLFYCIVIKYMIISCDLMGS 149
           Y INK RVG ++  L+  IV  Y++ +    GS
Sbjct: 42  YKINKNRVGIIILFLYIMIVTCYVLTNLTPPGS 74


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 683 NLFSYIVWPEVFNSNC*YLVI*FFLQKYS-ITHCH 582
           +LF+YI   +V+  N  +L+   FLQ  S + HCH
Sbjct: 102 DLFTYITEKKVYQGNS-HLIKTVFLQLISAVEHCH 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,301
Number of Sequences: 5004
Number of extensions: 63648
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)