Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1813
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    32   0.42 
12_02_1141 + 26415235-26415858                                         28   6.9  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    28   9.1  

>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
            35738117-35738172,35738452-35738547,35738844-35738961,
            35739406-35739672,35740023-35740124,35740302-35740659,
            35740750-35740863,35741045-35741676,35741895-35742103,
            35742597-35742819,35743419-35743538,35743888-35743914,
            35744281-35745045,35745431-35748511
          Length = 2142

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 227  NHDPNKNISYPRLF--CHVAFSFLEYHYNYCQTLHISTEINESITLQ 361
            N +P K I YP+LF  C VA    +Y + YCQ L +   + + +T +
Sbjct: 1738 NMEPEKVILYPQLFWGC-VALMHTDYVHIYCQVLELFCRVIDRLTFR 1783


>12_02_1141 + 26415235-26415858
          Length = 207

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 651 VQFELLIFGNLIFFTEIQHYSLPLYSQSR 565
           V F + ++G++I   ++ H  +PL+S+SR
Sbjct: 138 VPFPIAVYGSVIARDDLDHKCIPLFSRSR 166


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 48  NYSINKTRVGHVVRHLFYCIVIKYMII 128
           N+ + +  +GH+V  +FYC+V+   ++
Sbjct: 342 NFFLVRKIIGHIVTFVFYCLVVPATVL 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,138
Number of Sequences: 37544
Number of extensions: 294805
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)