Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1813
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209194-1|BAD92431.1| 122|Homo sapiens UDP-Gal:betaGlcNAc beta... 32 1.9
AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette, s... 30 7.7
AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette, s... 30 7.7
AJ012376-1|CAA10005.1| 2201|Homo sapiens ATP-binding cassette tr... 30 7.7
AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1 ... 30 7.7
AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette tr... 30 7.7
AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein. 30 7.7
AF165286-1|AAD49851.1| 344|Homo sapiens ATP cassette binding tr... 30 7.7
AF165281-1|AAD49849.1| 2201|Homo sapiens ATP cassette binding tr... 30 7.7
AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein. 30 7.7
>AB209194-1|BAD92431.1| 122|Homo sapiens UDP-Gal:betaGlcNAc beta
1,4- galactosyltransferase 6 variant protein.
Length = 122
Score = 32.3 bits (70), Expect = 1.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 66 TRVGHVVRHLFYCIVIKYMIISCDLMGSFDTSNGH*IEINIFQPFHL*KNS*DKIMTPIK 245
+R+ ++ ++ Y I I+ C G+ D +N H + I + H K +M P K
Sbjct: 24 SRIVYLKQNYGYLSQIVSFILKCHFYGNIDNTNDHKLNHKIIESLHFEKMDSFCVMIPNK 83
Query: 246 IF 251
IF
Sbjct: 84 IF 85
>AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberisiae) protein.
Length = 2261
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 712 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 745
>AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberog, Drosophila) protein.
Length = 2261
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 712 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 745
>AJ012376-1|CAA10005.1| 2201|Homo sapiens ATP-binding cassette
transporter-1 (ABC-1) protein.
Length = 2201
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 652 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 685
>AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1
sub-family A member 1 protein.
Length = 2261
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 712 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 745
>AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette
transporter 1 protein.
Length = 2261
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 712 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 745
>AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 712 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 745
>AF165286-1|AAD49851.1| 344|Homo sapiens ATP cassette binding
transporter 1 protein.
Length = 344
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 209 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 242
>AF165281-1|AAD49849.1| 2201|Homo sapiens ATP cassette binding
transporter 1 protein.
Length = 2201
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 652 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 685
>AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 515 YSDPPVLYAYLNIYFWQNFI*CFLV*NMNSGVNL 414
YSDP V++ +L+++ + CFL+ + S NL
Sbjct: 712 YSDPSVVFVFLSVFAVVTILQCFLISTLFSRANL 745
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,358,737
Number of Sequences: 237096
Number of extensions: 1875912
Number of successful extensions: 9630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9630
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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