Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1813
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -1

Query: 603 IQHYSLPLYSQSRQTL*IILLS----CH*-KFRFILRPSSLVC 490
           ++H   P+   S + L  +LLS    C+   F  +LRP+ +VC
Sbjct: 679 LKHNDTPVVRASGRELSYVLLSGILLCYLVTFALVLRPTDIVC 721


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 668 YMKRDYLTLHKINCTLMVQSI 730
           Y  ++YLT+H    TL + S+
Sbjct: 375 YSSQNYLTVHSFPSTLNIPSV 395


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 116 FYYNTIKQMPYYMSYSSF 63
           +YY   + +PY+MS S +
Sbjct: 233 YYYYMREMLPYWMSSSQY 250


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 116 FYYNTIKQMPYYMSYSSF 63
           +YY   + +PY+MS S +
Sbjct: 233 YYYYMREMLPYWMSSSQY 250


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 81  VVRHLFYCIVIKYMIISCD 137
           +V  LF   ++ YM++ CD
Sbjct: 4   IVILLFTLCIVSYMMVRCD 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,657
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)