Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1809
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    34   0.027
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    31   0.25 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.3  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   7.2  
SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar...    25   9.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.5  

>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +2

Query: 389 MQANLLEAQDMIRRLEEQLKQLQAAKEELERRQGELHDMMQRLEETKVTYLL---NKKQS 559
           + A  LEA  ++  L+EQ ++L    E  E++Q EL   +  LEET  T      N+ + 
Sbjct: 113 LDAKFLEAHKILENLDEQTRKL---SERTEKQQDELDIALDDLEETLNTLKRTSENRDRE 169

Query: 560 LFTVQNDSFT*ST 598
           +  +  D +T ST
Sbjct: 170 IARISQDVYTMST 182


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
 Frame = +2

Query: 386  MMQANLLEAQDMIRRLEEQLKQLQAAKEE---LERRQGELHDMM---QRLEETKVTYLLN 547
            +MQ+ L +    I   ++ LK+   +K++   LE +   LH+++   QRL E +   LLN
Sbjct: 850  IMQSGLSKLLSSINENKDNLKEFSKSKQKISYLESQLEGLHELLRESQRLCEGRTKELLN 909

Query: 548  KKQSLFTVQN 577
             +Q L+ +++
Sbjct: 910  SQQKLYDLKH 919


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 431 LEEQLKQLQAAKEELERRQGELHDMMQRLEETKVTYLLNKKQSLFTVQ 574
           L++  +QLQ   EELE ++ +L   + RL++  V   LN   SL T Q
Sbjct: 499 LDDHNRQLQMNVEELEGKKADLTSKINRLDKDFVK--LNTTYSLLTDQ 544


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +2

Query: 386 MMQANLLEAQDMIRRLEEQLKQLQAAKEELERRQGELHDMMQRLEETKVTYLLNKKQSLF 565
           M +   L  ++  R LEE+ ++ +  KEE ERR+ EL   +++  E K   L   K + F
Sbjct: 687 MAREQRLREEEEKRILEERKRREKLDKEEEERRRREL---LEKESEEKERRLREAKIAAF 743

Query: 566 TVQNDSFT*STG 601
              N +   S G
Sbjct: 744 FAPNQTKEGSDG 755


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 437 EQLKQLQAAKEELERRQGELHDMMQRLEETKVTYLLNK 550
           ++ KQL   K E+E R  EL  ++ +   T  T LL +
Sbjct: 2   DEFKQLDLKKREIENRLNELEGVLLKERVTMDTPLLTE 39


>SPAC23C4.09c |||DNA-binding TFAR19-related
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 410 AQDMIRRLEEQLKQLQAAKEELERRQGELHDMMQRLEETKVTYLLNKKQSLFTVQNDS 583
           A+D +RR+    K    A EEL  R  +   +  ++ E ++  LL K     + +N++
Sbjct: 57  ARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNET 114


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 123  CLISVKVHKYGKMKQSC 73
            CLIS+K+H++ K    C
Sbjct: 1175 CLISMKIHEFSKSNDFC 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,507
Number of Sequences: 5004
Number of extensions: 63289
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)