Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1809
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.35 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.35 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.82 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 180 HTTSLLAFPPKSPACAAPLPRTRDVSLSKHYCSV 281
           H+  L   P       AP P    +S SKH CS+
Sbjct: 79  HSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSI 112


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 180 HTTSLLAFPPKSPACAAPLPRTRDVSLSKHYCSV 281
           H+  L   P       AP P    +S SKH CS+
Sbjct: 79  HSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSI 112


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 401 LLEAQDMIRRLEEQLKQLQAAKEELERRQGELHDMMQRL 517
           L +A+  I+ LEE+ ++    KE+L R Q  L   +++L
Sbjct: 90  LTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQL 128


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 648 LQNHLKANMDIWHTALGNCQHST 716
           L +HLK++ +++     NC ++T
Sbjct: 32  LNSHLKSHSNVYQYRCANCTYAT 54


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 117  LNS**TTVITYLTLNRQNKTNHTTSLLAFPPKSPACAAPLPRTRDVSLS 263
            LN   T  +   T+ R N T  +    A+P  S     P+PR+ D+ LS
Sbjct: 893  LNDPTTVSLAVDTVARSNVTPRSPGR-AWPGDSDIRQRPIPRSDDIRLS 940


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 592 IYWLTGGKSQLSPTS 636
           + WL GGK +L+P++
Sbjct: 839 VTWLKGGKIELNPST 853


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 592 IYWLTGGKSQLSPTS 636
           + WL GGK +L+P++
Sbjct: 835 VTWLKGGKIELNPST 849


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 509 QRLEETKVTYLLNKKQSLFTVQNDSFT*STG 601
           QRL  T  T+  + + + FT+  +SFT  +G
Sbjct: 222 QRL--TSSTFASDPRYTTFTINGESFTLQSG 250


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 180 HTTSLLAFPPKSPACAAPLPRTRDVSLSKH 269
           H TS  A  P S A A+  P+T  +  S H
Sbjct: 674 HLTSPPARSPSSQAQASQCPQTASLLSSTH 703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,151
Number of Sequences: 438
Number of extensions: 4307
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)