Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1806
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    30   0.31 
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    27   2.2  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.9  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.9  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.7  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 647 LGIPL*LHTLPNTCLFSKQMVSSGQEVSDVLQHLNKTD 534
           LG+P      PN C+FS   V  G   +D+L H ++ +
Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
 Frame = +2

Query: 401 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS----------YLN 550
           +  VVI+     +      Y +V+VDG   I + C++  V+  ++ S           +N
Sbjct: 70  HPRVVIHTASPVHNLARDIYFEVNVDGTANIIKACQKFNVDALVYTSSAGVVFNGADLIN 129

Query: 551 AEEHPKPLVLKKPSAWKISKYLGECAVRE---EYPTATIIRASDIYGSEDRFL 700
            +E  +P+      A+  SK L E  V E   E      +R + ++G  DR L
Sbjct: 130 VDE-SQPIPEVHMDAYNESKALAEKQVLEASSESLKTAALRVAGLFGPGDRQL 181


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 344 PGLNLRTLSTFGHHRNRLCMVKLTGY 267
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 374 EESIAKAVRYSNVVINLVGRDYETKNFKYND 466
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 560 HPKPLVLKKPSAWKISKYLGECAVREEY 643
           H  P  L +PSA ++ KYL E A +  Y
Sbjct: 4   HDPPAPLSQPSASRLQKYLLESAEKHAY 31


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +2

Query: 362 HLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 541
           H L   S AK+     +  +  G D  + N K  +VH++ V +IA     EG+ R     
Sbjct: 58  HRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDPEGL-RVCFWD 116

Query: 542 YLNAEEHPKPLVLK--KPSAWKISKYL 616
            +N ++ P  L+L+  +   W +   L
Sbjct: 117 AVNCDD-PDGLLLRFLRARKWNVEAAL 142


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 206 TVFGCTGFVGRYVCNKLGKIGT 271
           T   CTG V  + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,216
Number of Sequences: 5004
Number of extensions: 63901
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)