Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1806
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3380|AAF51613.1|  416|Drosophila melanogaster CG6020-PA...   278   5e-75
BT004491-1|AAO42655.1|  327|Drosophila melanogaster GM13757p pro...   200   1e-51
BT029034-1|ABJ16967.1|  324|Drosophila melanogaster IP02858p pro...   156   3e-38

>AE014296-3380|AAF51613.1|  416|Drosophila melanogaster CG6020-PA
           protein.
          Length = 416

 Score =  278 bits (682), Expect = 5e-75
 Identities = 140/201 (69%), Positives = 153/201 (76%)
 Frame = +2

Query: 146 NLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKV 325
           N AA KRGTGGRSSFNGIVATVFG TGFVGRYVCNKLGK GTQ+ILPYRGD  D  RLKV
Sbjct: 47  NPAAMKRGTGGRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGDDSDVIRLKV 106

Query: 326 CGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARIC 505
            GDLGQVLF  Y+L D  SI  AV++SNVVINLVGRD+ETKNFK+ DVHV+G  RIARI 
Sbjct: 107 TGDLGQVLFHFYNLEDPASIRDAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIA 166

Query: 506 REEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGS 685
           RE GVER IHLS LN E +PK L +K  S W  SKY GE  VR+ +P ATIIR +DIYGS
Sbjct: 167 REAGVERLIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGS 226

Query: 686 EDRFLRSLVNKMRSHSNLMPL 748
           EDRFLR   +  R     MPL
Sbjct: 227 EDRFLRYYAHIWRRQFRSMPL 247


>BT004491-1|AAO42655.1|  327|Drosophila melanogaster GM13757p
           protein.
          Length = 327

 Score =  200 bits (489), Expect = 1e-51
 Identities = 102/158 (64%), Positives = 115/158 (72%)
 Frame = +2

Query: 275 LILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNF 454
           +ILPYRGD  D  RLKV GDLGQVLF  Y+L D  SI  AV++SNVVINLVGRD+ETKNF
Sbjct: 1   MILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIRDAVKHSNVVINLVGRDFETKNF 60

Query: 455 KYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVR 634
           K+ DVHV+G  RIARI RE GVERFIHLS LN E +PK L +K  S W  SKY GE  VR
Sbjct: 61  KFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVR 120

Query: 635 EEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPL 748
           + +P ATIIR +DIYGSEDRFLR   +  R     MPL
Sbjct: 121 DAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPL 158


>BT029034-1|ABJ16967.1|  324|Drosophila melanogaster IP02858p
           protein.
          Length = 324

 Score =  156 bits (379), Expect = 3e-38
 Identities = 78/123 (63%), Positives = 89/123 (72%)
 Frame = +2

Query: 380 SIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEE 559
           SI  AV++SNVVINLVGRD+ETKNFK+ DVHV+G  RIARI RE GVER IHLS LN E 
Sbjct: 33  SIRDAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERLIHLSSLNVEA 92

Query: 560 HPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNL 739
           +PK L +K  S W  SKY GE  VR+ +P ATIIR +DIYGSEDRFLR   +  R     
Sbjct: 93  NPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRS 152

Query: 740 MPL 748
           MPL
Sbjct: 153 MPL 155


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,836,797
Number of Sequences: 53049
Number of extensions: 703875
Number of successful extensions: 1737
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)