Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1806
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   204   4e-53
U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   6.2  
AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  204 bits (499), Expect = 4e-53
 Identities = 109/222 (49%), Positives = 143/222 (64%)
 Frame = +2

Query: 59  QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGR 238
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG +GF+G 
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGASGFLGL 73

Query: 239 YVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVI 418
            V NK  K G+Q+I+PYR D Y  +  KV G+LGQVL+ P+ L+DEESI KAV+YSNVVI
Sbjct: 74  PVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRKAVKYSNVVI 133

Query: 419 NLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAW 598
           NL+G    T  + Y DV+  G RR+ARIC+E GVE+F+HLS L A   P+       S +
Sbjct: 134 NLIGTRVPTGKYNYYDVNDTGARRLARICKEMGVEKFVHLSALGATTQPQKGHFVAKSQF 193

Query: 599 KISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMR 724
             SK LGE AVREE+P ATIIR S IYG  D F++  V++ R
Sbjct: 194 LHSKGLGEVAVREEFPEATIIRPSVIYGELDGFIQYYVSRWR 235


>U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC8.1 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
 Frame = +2

Query: 209 VFGCTGFVGRYVCNKLGKIGT-QLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESI 385
           + G  GF+G +V + L KIG  + I+       + + +K+  D   + +     LD++ +
Sbjct: 6   IVGGGGFLGAHVISALQKIGCKERIIVVDPCPQEFKTIKI--DKSNISYIKASFLDDKVL 63

Query: 386 AKAVRYSNVVINL--VGRD--YETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNA 553
              +  ++ V++L  VG            ++ +V+G +++ + C+  GV+RF++ S +  
Sbjct: 64  ENILNGASAVVHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIKQCKALGVKRFLYASSVAV 123

Query: 554 EEHPKPL 574
               +PL
Sbjct: 124 SFIGEPL 130


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 226 ICRTLCVQQIGKNWYPVNFTIQRRFL*CPKVESVRRFRPGPV 351
           +C    +  I +  Y VN T+Q   + CP VES    +P PV
Sbjct: 660 LCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701


>AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical
           protein T10D4.3 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 247 AHIASDKSGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTH 95
           AH +   +   ++ GY+ + + A     +   ++G+ +RT+ S  D  N H
Sbjct: 175 AHYSRFLADLRQHLGYEFIISVAVPQAEVSNLELGYDLRTISSHVDFFNVH 225


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 163 LICCKVGFTIRTVVSGFDVHNTHRPIQMK 77
           L C KV  ++RT V   + H+TH  +Q++
Sbjct: 29  LTCRKVCRSLRTAVDKIETHSTHLTVQLR 57


>AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical
           protein T13G4.4 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 426 LDEIMKLRISNTMMFTLMV*EELPESAEKKELKDSF 533
           LD  +K+  SNT  F   + + +PE+AEK+EL + +
Sbjct: 112 LDLEVKVITSNTYHFGSTLDKTIPENAEKRELYEKY 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,921
Number of Sequences: 27780
Number of extensions: 366349
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)