Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1804
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    34   0.021
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    30   0.45 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.79 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   5.5  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.7  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = -1

Query: 328 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPP 158
           P  P AP+ P APV P  PS+P  P  P+ P +     P    VA       +P PP
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEV--PSVPQPP 593



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -1

Query: 328 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPSS 152
           P  P  P+ P+APV P  PS+P  P  P+ P       P   AV        +P PP++
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEV--PSVPQRPAVPVVPEAPSVPQPPAA 640



 Score = 32.3 bits (70), Expect = 0.084
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 328 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPS 155
           P  P  P+ P APV P  PS+P  P  P+ P +     P    V        +P PP+
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV--PSVPQPPA 684



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 328 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 212
           P  P  P+ P APV P  PS+P  P  P+ P + +   P
Sbjct: 659 PEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEP 697



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 367 LTSASIRSIKSSDPLGPRAPRGPLAPVSPLGPSMPGGPCGPLGP 236
           ++SAS ++ + S  + P  P+ P APV P  PS+   P  P+ P
Sbjct: 497 ISSASQKAAQPS-VITPSVPQPPAAPVVPEAPSVHQPPAAPVAP 539



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 328 PLGPRA---PRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVA 194
           P+ P A   P+ P+APV+P  PS+P  P  P+ P +     P    VA
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVA 613


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +3

Query: 396 VYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEI 545
           V+     P+   ++K  +   + +++ + S+  + L  Y  PS+ASP ++
Sbjct: 559 VFVHPPSPQSLYVEKLEKLNIRSDEVSKPSKASKTLHGYALPSLASPYDV 608


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -1

Query: 346 SIKSSDPLGPRAPRGPLA---PVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA 176
           S  SS P  P  PR   A   P+ P G S P  P     P + RQ PP    ++SS   +
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP----LSSSRAVS 386

Query: 175 *LPSPP 158
             P+PP
Sbjct: 387 NPPAPP 392


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -1

Query: 319  PRAPRGPLAPVSPLGPSM----PGGPCGPLGPRSHRQYPPSNGAV-ASSTLYA*LPSPPS 155
            P AP   +APV P  P M    P     P  P    Q PP+   V   S + +    PPS
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPS 1507

Query: 154  S 152
            S
Sbjct: 1508 S 1508


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 395 RLQRRRKAGTIQSPKGLAPPTQAGEN*PGQQNRT 496
           ++Q+++KA   QSPK   PP    ++ P Q+  T
Sbjct: 309 QMQQQQKAQQQQSPKAQQPPAHLVQSAPVQRKTT 342


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 387 EARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQ 497
           E RV K+GE+P +    +A    RK+E   R + T +
Sbjct: 510 EGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNE 546


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 418 RNDSISKRLGAANASRRKLTGTAEPNRS*KRTRRHLLQAPSKYLLEVVREKYATI 582
           R   I ++   ++  +RKLT T +   +    R  LL++P+K   + +R + A I
Sbjct: 198 RKKKIRRKPTPSSTKKRKLTRTGQKLGTDMNIRLELLKSPAKPQAQSMRGREARI 252


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 238 PRSHRQYPPSN--GAVASSTLYA*LPSPPSS 152
           P + R+ P  N  G+V  S LY  +PSPPSS
Sbjct: 209 PNTFRRSPLKNDTGSVELSNLY--MPSPPSS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,935
Number of Sequences: 5004
Number of extensions: 55248
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)