Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1804
         (814 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    28   0.39 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.52 
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    27   0.91 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   0.91 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   1.6  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    26   1.6  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   4.8  
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     24   6.4  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   6.4  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   8.5  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 0.39
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 411 EKPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEISSRGRTG 566
           +KP    + K W++ R +  I R  R + + EA  A     P + +++ R G
Sbjct: 94  DKPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQG 145


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 0.52
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = -1

Query: 319 PRAPRGP--LAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNG 203
           P  P GP  + P   +GP   G P  P  PR    YP   G
Sbjct: 183 PGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPG 223


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 316 RAPRG--PLAPVSPLGPSMPGGPCGPLGPRSHRQY 218
           R P G  P  P SP GPS PG      G RSH  +
Sbjct: 364 RTPSGTEPKTPTSPTGPSGPGS-----GHRSHDSF 393


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 328 PLGPRAPRG-PLAPV-SPLGPSMPGGPCGPLGPRSHR 224
           P G    +G P  PV    GPS P GP GP G +  R
Sbjct: 563 PPGLTGEKGEPGLPVWKDRGPSGPSGPLGPQGEKGDR 599



 Score = 26.6 bits (56), Expect = 0.91
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 322 GPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNG 203
           GP+  RG   P    G   P G  GP G +  R     NG
Sbjct: 615 GPQGQRGLPGPQGEKGDQGPPGFIGPKGDKGERDRDGLNG 654



 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -1

Query: 316 RAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNG 203
           R P GP  P+ P G     G  G +G   +   P   G
Sbjct: 581 RGPSGPSGPLGPQGEKGDRGDSGLMGRPGNDGLPGPQG 618



 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -1

Query: 322 GPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAV 197
           G    +G        GP    GP GP G   HR    ++G V
Sbjct: 30  GEMGEQGRTGAQGNAGPPGAPGPVGPRGLTGHRGEKGNSGPV 71



 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 322 GPRAPRGPLAPVSPLGPSMPGGPCGPLGP 236
           GP    GP+ P    G     G  GP+GP
Sbjct: 45  GPPGAPGPVGPRGLTGHRGEKGNSGPVGP 73


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -1

Query: 328 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNG 203
           P GPR   GP  P    G     G  G +GP+  +  P   G
Sbjct: 415 PKGPRGYEGPQGPKGMDGFDGEKGERGQMGPKGGQGVPGRPG 456


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 310 PRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 212
           PR  + P  P  P +  GP GPL P      PP
Sbjct: 87  PRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPP 119


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 319 PRAPRGPLAPVSPLGPSMPGGPCGPLGP 236
           P  P GP  P SPL     GGP G   P
Sbjct: 587 PPPPMGP--PPSPLAGGPLGGPAGSRPP 612


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 756 SRSXSRSHSQFPPHH 712
           + S S SHSQ  PHH
Sbjct: 342 NNSSSHSHSQAQPHH 356


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 562 REKYATIQQLTGQW*KVIMTLKTCRWA 642
           +E+ ATI+Q   QW     T +  RWA
Sbjct: 868 QERQATIEQWQQQWDAEADTSRHTRWA 894


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 618  HYHLSPLTSQLLNRGVFLPYDLEKIFRRGLQQMAPC 511
            H  L+ +   LL      PYD E +  RGLQ+   C
Sbjct: 2575 HVRLAEIAHSLLKVS---PYDRESMACRGLQRYMQC 2607


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,895
Number of Sequences: 2352
Number of extensions: 15307
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)