Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1803
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 129 2e-30
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 39 0.005
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 38 0.007
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 36 0.028
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 30 2.5
05_07_0290 + 29016410-29018920 29 4.3
04_04_1296 + 32437089-32437386,32437422-32437429 29 5.7
01_02_0074 + 10869546-10871373,10871449-10872077 29 5.7
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 7.5
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 28 7.5
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 28 7.5
02_01_0251 - 1652356-1652522,1652564-1652608,1652658-1652733,165... 28 7.5
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 129 bits (312), Expect = 2e-30
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 4/177 (2%)
Frame = +2
Query: 98 TAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDY 277
T + P T +++I +K+ G ++A DT SYGS R++ R+ V L+G G++
Sbjct: 359 TQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEF 418
Query: 278 ADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD 457
+DFQ + + + + + DG L P+ +H +LTRV+YN+R+K DPLWNS V+ G++
Sbjct: 419 SDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKK 478
Query: 458 G----EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRK 616
G E +LG V+ +GT +E+ I+ G G +MA P+LR + + E A+ +V K
Sbjct: 479 GPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEW-REDMTFEEAVKLVEK 534
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 38.7 bits (86), Expect = 0.005
Identities = 37/181 (20%), Positives = 77/181 (42%)
Frame = +2
Query: 119 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 298
+ T TT++G+ F G V+ DT + G + ++C ++ + I G AD + +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 299 DIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLGA 478
D++ ++ R G + + + L L++ + + + V+ G+ P L
Sbjct: 95 DMVSSQLQLHR-YATGRESRVVTSLTLLKSHLFSYQGHVSA---ALVLGGVDVTGPHLHT 150
Query: 479 VDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSXGGXFSTEMLARS 658
V G+ + G G+ A + +G L +E I +V ++ G ++ + S
Sbjct: 151 VYPHGSTDTLPFATMGSGSLAAMSVFESKYKEG-LTREEGIQLVAEAIRGGIFNDLGSGS 209
Query: 659 N 661
N
Sbjct: 210 N 210
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 131 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 310
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + D ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVR 85
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 131 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 310
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + + ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVR 85
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -3
Query: 666 VALERASISV----EKXPPXLLRTTAIAVSWSRGPLSTASLSRGVAM*APSPFEITASSY 499
+AL AS+ V E PP L+ TT +A + R P++ L+ G A+ P P + Y
Sbjct: 148 LALAMASLLVYMEEEPAPPELVTTTTLAAVYGRAPVALL-LAAGSAL-DPRPSHLRYLQY 205
Query: 498 AVPNLSTAPRKGSPS*IP 445
R G P+ P
Sbjct: 206 VARLRGMTTRHGPPTPSP 223
>05_07_0290 + 29016410-29018920
Length = 836
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Frame = +2
Query: 224 PRVMKVNDLILLGC-GGDYADFQYL-----KDIIQQKIID-----ERCVGDGLQLKPRSL 370
P V+ LI C G+Y D Y KD +Q ++ C G LQ K + L
Sbjct: 426 PNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKEL 485
Query: 371 HCWLTRVLYN 400
HC+ R Y+
Sbjct: 486 HCFALRRAYD 495
>04_04_1296 + 32437089-32437386,32437422-32437429
Length = 101
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 590 LGPEVLYPLRPSAEESPCKLLARSRSQHLHMLFPIYQQLRERVHH 456
LGPE + P SA ++P +LL R ++HL + RER H
Sbjct: 33 LGPESMQPA--SAMQAPPQLLLRYSNRHLRNAVAVPAYERERESH 75
>01_02_0074 + 10869546-10871373,10871449-10872077
Length = 818
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 26 PGAFYNFPGNASTIAPSRHGVQ--DFTAHSASPITTTTTVIG 145
PG Y F G A + P HG+ +FT SA+ T +G
Sbjct: 642 PGRTYKFYGGADVLYPFGHGLSYTNFTYASATAAAPVTVKVG 683
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 275 YADFQYLKDIIQQKIIDERCVGD----GLQLKPRSLHCWLTRVLY 397
+AD++ L D +++D V D G PR LH W R LY
Sbjct: 42 HADWRGLPDAAVSRVLDRLPVVDLFRLGYLFSPRWLHIWRARPLY 86
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 227 RVMKVNDLILLGCGGDYADFQYLKDIIQQKI 319
RVM V+DL+LLG YAD ++ ++ + K+
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKL 77
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 28.3 bits (60), Expect = 7.5
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Frame = +2
Query: 137 VIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQK 316
VIGV V+A DT L D +VM ++ L+G G+ D + I QK
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFI-QK 62
Query: 317 IIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKLG 493
+ + + L + TR + +P + + ++AG D L +D +
Sbjct: 63 NLHLYQFRNNIPLSTAAT-ANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIA 121
Query: 494 TAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRK 616
T ++ + G G+Y L+ D + + + E A+ +V K
Sbjct: 122 TFHKIEKGAFGYGSYFCLSLM-DKLYRPDMSVEEAVDLVDK 161
>02_01_0251 -
1652356-1652522,1652564-1652608,1652658-1652733,
1652976-1653041,1653120-1653238,1653334-1653508,
1653604-1653881,1654253-1654436,1654455-1654550,
1654872-1655012,1655091-1655123
Length = 459
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 487 FINSSEKGFTILNTGDHVAVPERIHLAPLVVED 389
F+ EKG+ +LN H E++ AP++ +D
Sbjct: 105 FLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQD 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,325,890
Number of Sequences: 37544
Number of extensions: 475446
Number of successful extensions: 1605
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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