Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1803
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...   127   1e-29
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    35   0.078
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    35   0.078
Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical pr...    34   0.10 
Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical pr...    34   0.10 
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score =  127 bits (306), Expect = 1e-29
 Identities = 68/186 (36%), Positives = 114/186 (61%), Gaps = 10/186 (5%)
 Frame = +2

Query: 92  DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 271
           D    + +P  T T+VI +++  G V+  D + SYG +AR+++  R  KVND +L+  GG
Sbjct: 5   DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64

Query: 272 DYADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI 451
           D+ADF +L+++I+++++  +       + P++LH +LT +LY KR KM+P+WN+ VVAG+
Sbjct: 65  DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGV 122

Query: 452 QDGE--------PFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDK--GPLDQETAI 601
           ++ E        PF+G + + G AY+   I+ GLGA++    + D   K    L +E A 
Sbjct: 123 EEEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAFLLNQAVEDEWRKKGEDLSREEAE 182

Query: 602 AVVRKS 619
           AV+RKS
Sbjct: 183 AVLRKS 188


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
 Frame = +2

Query: 125 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 301
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 302 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD---GEPF- 469
           ++Q ++   R       +        L+R LY +R    P +   ++AGI +   G  F 
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166

Query: 470 ---LGAVDKLGTAYEDA---VISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSXGGX 631
              +G +++LG +   A   +I   L   +    L +  ++  L  + AI++++ S  G 
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGA 226

Query: 632 FSTEM 646
              E+
Sbjct: 227 AEREI 231


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
 Frame = +2

Query: 125 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 301
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 302 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD---GEPF- 469
           ++Q ++   R       +        L+R LY +R    P +   ++AGI +   G  F 
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166

Query: 470 ---LGAVDKLGTAYEDA---VISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSXGGX 631
              +G +++LG +   A   +I   L   +    L +  ++  L  + AI++++ S  G 
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGA 226

Query: 632 FSTEM 646
              E+
Sbjct: 227 AEREI 231


>Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 679 HXRAGSVGTREHLCRKAPSXTFTYNRNSSFLVQRSFIHCVPQQRSRHV 536
           H  + +V T    C K PS  +TYN       Q   + CVP+ +  H+
Sbjct: 506 HCTSRNVTTYSVYCWKRPSHVYTYNHQEEKFEQHKCLACVPRVQENHL 553


>Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 679 HXRAGSVGTREHLCRKAPSXTFTYNRNSSFLVQRSFIHCVPQQRSRHV 536
           H  + +V T    C K PS  +TYN       Q   + CVP+ +  H+
Sbjct: 506 HCTSRNVTTYSVYCWKRPSHVYTYNHQEEKFEQHKCLACVPRVQENHL 553


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +2

Query: 56  ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 235
           AST +P     Q   A  A  +    T+I ++   G V+  D L S   L      PR+ 
Sbjct: 12  ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68

Query: 236 KVNDLILLGCGGDYADFQYLKD 301
            VND + +   G+Y D   LK+
Sbjct: 69  NVNDNVGVAVAGNYPDGFALKN 90


>AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.6 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 437 RSCSREDPSCSSCCRGH 387
           R CS ++P+C S C GH
Sbjct: 117 RECSEKNPNCGSSCEGH 133


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 466 GFTILNTGDHVAVPERIHLAPLVVEDTSQPAVQ 368
           GF + +TG  VAVP  +HLA  ++   +   +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315


>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 21  RRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 119
           ++ +H+I+FL+ L  LL   T  R L  TQ  P
Sbjct: 39  KQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 118 HHDHHNGHRS 147
           HH HHNGHRS
Sbjct: 459 HHHHHNGHRS 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,926
Number of Sequences: 27780
Number of extensions: 377951
Number of successful extensions: 1296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)