Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1802
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.84 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 507 ICVIDKGIKIDYFDEKNATTNPINKTKKQE 596
           +C + +G++   FDEKNA  N I    K+E
Sbjct: 132 LCDLVQGLE-RLFDEKNAGNNKITMKSKKE 160


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 212 FVHSDLPIVISIRDILGQASVQEHRL 135
           F++  +PI +SI D L  A + EHR+
Sbjct: 407 FINKIIPIRMSIHDELLGADLVEHRI 432


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 154  EAWPRISRMEITIGRSLCTKSSPLPKQQTYTHSSCLYPRVMKRIWVRTVLSCQ 312
            + W  +  ME+    +L T  + L K   YT     + RV   +   TV  CQ
Sbjct: 1157 DMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGV-PTTVTYCQ 1208


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 154  EAWPRISRMEITIGRSLCTKSSPLPKQQTYTHSSCLYPRVMKRIWVRTVLSCQ 312
            + W  +  ME+    +L T  + L K   YT     + RV   +   TV  CQ
Sbjct: 1153 DMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGV-PTTVTYCQ 1204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,908
Number of Sequences: 438
Number of extensions: 3010
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)